Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01498 ATGGCCACCGCCCAGAACGGCACCGCCGCGAAGTCACTCTCGCCGCCGGACAATGCCTCCGCCGAGACGGAGTTCGAGGCCGCCGCGCCGGAGAAGAGATGGCCGGGGTGGCCCGGCGACTGCGTCTTCCGTCTCATCGTGCCGGTGGGGAAAGTGGGAAGCATCATTGGGCGCAAGGGAGAGCTCATAAAGAAGATGTGCGAAGAAACTCGATCCCGCATTCGCGTTCTCGACGCTCCTCTCGCCACTCCTGATCGAATTGTACTTGTATCAGGGAAGGAAGAGCTGGAGGCAGCTCTTTCCCCTGCAATGGATGCTGTAATAAGGGTATTCAAGCGAGTCTCTGGATTATCTGAAACTGATGCTGAGAACAAAGATTCTGCTGCTGGTCTTGCATTTTCTTCAATTCGTTTATTGGTGGCATCAACACAGGCTATTAATTTAATTGGAAAGCAAGGCTCGTTAATCAAATCTATTCAGGAGAGTACCGGTGCTTCTGTTAGAGTACTGTCAGGAGATGAGGTGAAACTTTATGCTACTGCGGATGAGAGAATTGTTGAAATGCAAGGAGAAGCCTTCAAGGTCCTTAAAGCTCTAGAAGCAGTAGTTGGCCATCTTAGGAAATTTTTGGTTGATCATAGTGTTCTTCCCCTATTTGAGAAAACTTACAATGCGCCCATCTCACAAGACCGTCAGGCAGAGACATGGTCTGACAAATCACTGCTGCATACTACTTCACAAACTAGCATTTTTGCTGATATTCCTCTTTCAACAAAAAGGGATTCTATCCTAGCTGACCGAGAAAGTCAATTGGACTCATTACTCCCTTCCTCCACTATGTCTCTCTATGGACAAGAATCTTCACTTTCTGGTATTCGTTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCGTATGCGGAGGACATAATTGGTATTCAGGGGGCTAATATTGATTACATTCGCCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCATCGTGGAAATAAAAGGCACCTCATCTCAGGTTCAAACAGCACAACAGTTGATTCAGGATGTTGTAAGCAATCATAACGAACCTGTCTCTAGCAGTTACGGCAGGCTAGATGCAGGTCTGAGGTCTTCATACTCTCAGTTGGGCCCTGCATCACGCCTCTCATCTTCCTTGCCCTCACAACCATACACAGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACATTCAGGCTTTAA 1293 0.478 MATAQNGTAAKSLSPPDNASAETEFEAAAPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLATPDRIVLVSGKEELEAALSPAMDAVIRVFKRVSGLSETDAENKDSAAGLAFSSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVKLYATADERIVEMQGEAFKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNAPISQDRQAETWSDKSLLHTTSQTSIFADIPLSTKRDSILADRESQLDSLLPSSTMSLYGQESSLSGIRSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGANIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQDVVSNHNEPVSSSYGRLDAGLRSSYSQLGPASRLSSSLPSQPYTGYGASGLGDYSTFRL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01498 430 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 28 419 - -
Cca08g01498 430 ProSiteProfiles Type-1 KH domain profile. 133 202 - -
Cca08g01498 430 ProSiteProfiles Type-1 KH domain profile. 40 107 - -
Cca08g01498 430 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 33 95 IPR036612 GO:0003723
Cca08g01498 430 Pfam KH domain 136 202 IPR004088 GO:0003723
Cca08g01498 430 Pfam KH domain 43 100 IPR004088 GO:0003723
Cca08g01498 430 Pfam KH domain 310 372 IPR004088 GO:0003723
Cca08g01498 430 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 131 214 IPR036612 GO:0003723
Cca08g01498 430 CDD KH-I 309 371 - -
Cca08g01498 430 Gene3D K Homology domain, type 1 305 379 IPR036612 GO:0003723
Cca08g01498 430 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 28 419 - -
Cca08g01498 430 MobiDBLite consensus disorder prediction 1 19 - -
Cca08g01498 430 CDD PCBP_like_KH 135 203 - -
Cca08g01498 430 Gene3D - 40 210 - -
Cca08g01498 430 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g01498 430 CDD PCBP_like_KH 42 111 - -
Cca08g01498 430 ProSiteProfiles Type-1 KH domain profile. 307 370 - -
Cca08g01498 430 SMART kh_6 132 207 IPR004087 GO:0003676
Cca08g01498 430 SMART kh_6 39 112 IPR004087 GO:0003676
Cca08g01498 430 SMART kh_6 306 375 IPR004087 GO:0003676
Cca08g01498 430 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 303 376 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01498 Cca-Chr8 44285303 44292611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01498 K21444 - gmx:100815466 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01498 08 44285303 44292611 Cca08g01498 08 44285303 44292611 ECH
Cca11g02436 11 51324906 51328901 Cca08g01498 08 44285303 44292611 PCT