Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02432 ATGGGAACGTTCCACACCTTAAGGAAGGCTTACGGTGCTCTCAAAGACTCCACCACGGTTGGCCTAGCCAAGGTCAATAGCGAATACAAGGATTTGGATATTGCAATTGTCAAGGCTACCAGTCACGTAGAGTATCCTCCTAAGGAACGTCATGTTCGAAAAATATTCTATGCAACTTCAGTACACCAACCAAGGGCAGATGTGGCTTACTGCATACATACACTTGCCAAGAGGCTTTTAAAGACTCGGAATTGGATAGTTGCTATAAAGACATTAATTGTCATTCATAGGATATTGAGAGAAGGTGATCCTACTTTCAAAGAAGACCTTATAAACTATGCGCGCAAGGGACGTTTTCTTCAAATATCCAATTTCAAAGATAACTCAAGCCCTTTAGCATGGGATTGTTCTGCATGGGTTCGAACTTATGCATTATTTTTAGAAGAAAGGCTTGAATGTTACAGAGTCCTTAAATATGATATTGAGGGTGAACGTTTAATAAAATTGGGATCGGCCAAGGCTTTATCTCAGTTACATAGCAAAACACGAACTTTGACAAGTGAAGAGCTTTTAGAGCAGTTGCCTACACTTCAACAACTTCTATACCGCCTTGTTGGTTGTCAGCCTGATGGATTGGCTTTCAACAATTATCTAATACAGTATGCACTGGCCTTGGTATTGAAAGAGAGCTTCAAAATATATTGTGCCTTGAATGACGGAATCATAAATCTTGTGGATGGGTTCTTTGATATGACAAAATATGATGCAATGAAGGCGTTACAGATCTATAAAAGAGCTGGCCAACAGGCCGAATATCTTGCTGACTTCTATGAATACTGCAAGCGATTGGACCTTGCTAGGAATTTTCAATTTCCTACCTTGAAACATCCACCTGCTTCTTTTCTTGCCACAATGAAAGAATACATTAAAGAAGCACCCCTTACTGCTACTAAGAGATTGGAGTATCACAAAGATGACCAATCAGCTCAAAAAGAAGAAACGAAACCCAAAGAATCTGAAGAGAAGGCAGAAGCCGAAGCAAATAACAAACTAGATGAAGAAGTCAATGAGGAAGAACGTGAAGATAAAGAAGAAACACAACCTAAGGAAGAGGAAGCTGAACTTCCTCCTCTTATATCAACTGATACTATTGATGATTTGTTGGGTCTACATGAAATAAATCCAAAAGCTCTGGAACTAGAAGAAAACAATGCTTTGGCTCTTGCAATTGTACCAGCCAGCGGAAATAACTCGAGCAATATTGCTTTGGCTGACATGAGCGGAACTTCTGGTTGGGAACTAGCACTGGTTACAACACCAAGTAACCATACAAGCCAAGCGATAGATCGCAAAATGGCCGGTGGATTTGACAAGTTATTACTAGACAGTTTGTACGAAGATGAAAATGCGAGGAGACAACTCCAACTCCGAAATGCAGGCTATGGATATGGGAAAATGGATACACATAATCCATTCGAACATCATAATCAGCATGATCCATTTGCAATGTCCAACAACATAGCACCTCCACCCAATGTGCAAATGACATTCATGACTcagcagcaacaacaacaacaacaaATGATGTTCCAACAACAACAATATAACATGATGGTCCCTTACCAGTATCCACAGAATCAATACCCTCAACAAATGCCAATGATGGGTTCTTCTAATCCATTCAGTGATCCGTTACCCATGCCTAGCTATCCTTATAGTTCCATGCACCATCAAGGAAACTACCATTTAATGTAG 1755 0.396 MGTFHTLRKAYGALKDSTTVGLAKVNSEYKDLDIAIVKATSHVEYPPKERHVRKIFYATSVHQPRADVAYCIHTLAKRLLKTRNWIVAIKTLIVIHRILREGDPTFKEDLINYARKGRFLQISNFKDNSSPLAWDCSAWVRTYALFLEERLECYRVLKYDIEGERLIKLGSAKALSQLHSKTRTLTSEELLEQLPTLQQLLYRLVGCQPDGLAFNNYLIQYALALVLKESFKIYCALNDGIINLVDGFFDMTKYDAMKALQIYKRAGQQAEYLADFYEYCKRLDLARNFQFPTLKHPPASFLATMKEYIKEAPLTATKRLEYHKDDQSAQKEETKPKESEEKAEAEANNKLDEEVNEEEREDKEETQPKEEEAELPPLISTDTIDDLLGLHEINPKALELEENNALALAIVPASGNNSSNIALADMSGTSGWELALVTTPSNHTSQAIDRKMAGGFDKLLLDSLYEDENARRQLQLRNAGYGYGKMDTHNPFEHHNQHDPFAMSNNIAPPPNVQMTFMTQQQQQQQQMMFQQQQYNMMVPYQYPQNQYPQQMPMMGSSNPFSDPLPMPSYPYSSMHHQGNYHLM 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02432 584 SUPERFAMILY ENTH/VHS domain 30 161 IPR008942 -
Cca11g02432 584 SUPERFAMILY GAT-like domain 180 311 - -
Cca11g02432 584 Gene3D ANTH domain 176 324 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cca11g02432 584 Gene3D - 6 161 IPR008942 -
Cca11g02432 584 Coils Coil 337 364 - -
Cca11g02432 584 SMART enth_2 30 161 IPR013809 -
Cca11g02432 584 MobiDBLite consensus disorder prediction 321 376 - -
Cca11g02432 584 Pfam ANTH domain 31 311 IPR011417 GO:0005543
Cca11g02432 584 MobiDBLite consensus disorder prediction 321 380 - -
Cca11g02432 584 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Cca11g02432 584 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 571 IPR045192 GO:0048268|GO:0072583
Cca11g02432 584 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 571 - -
Cca11g02432 584 CDD ANTH_N 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02432 Cca-Chr11 51282671 51288828 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02432 K20044 - gmx:100815975 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02432 11 51282671 51288828 Cca11g02432 11 51282671 51288828 ECH
Cca11g02432 11 51282671 51288828 Cca08g01501 08 44343766 44349843 PCT