Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01501 ATGGGAACGTTTCAAAGCTTCAGAAAAGCTTATGGAGCTCTCAAGGACTCCACCAAGGTTGGCCTTGCCAAAGTCAACAGTGAATACAAGGAGTTGGATATTGCAATTGTAAAAGCTACAAATCACGTGGAATATCCTCCCAAAGAACGTCATGTTAGAAAAATATTCTATGCCACGTCAGCACACCAGCCAAGGGCAGATGTGGCATACTGCATTCACAAACTTTCTAAGAGACTTTCCAAGACACGAAGTTGGATAGTTGCTATAAAGACATTGATAGTAATTCATAGAACTTTGAGAGAGGGTGATCCTACCTTTAGAGAGGAGATTCTTAACTACTCACGCAGGGGACATATTCTCCAAATATCCAACTTCAAAGATGACTCAAGTCCTCTAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCATTATTTTTAGAAGAAAGACTTGAATGCTTTAGAGTTCTTAAATATGACATAGAATCTGAGCGTTTAACAAAATCATCACCCGCTGTAAATAAAGCACATAGTAGAACTCGATCATTGGCTAATGATGATTTGTTGGAACAATTACCTGCACTACAACAACTTCTATATCGCCTTATTGGTTGTCAGCCTGAAGGATGTGCATACAACAATTATATAGTACAATATGCGTTGGCCCTGGTTTTGAAAGAGAGTTTTAAAATATATTGTGCACTTAATGATGGGATTATCAATCTTGTGGACATGTTCTTTGATATGTCAAGACATGATGCAGTGAAGGCTTTAAATATTTATAAAAGAGCTGGCCAACAGGCTGAGAATCTTGCTGACTTCTATGAATACTGCAAAGGCTTGGAACTTGCTAGGAATTTCCAATTTCCAATACTAAGACAGCCACCTCCTTCTTTCCTTGCAACAATGGAAGAATACATTAAAGAAGCACCCCAAACAGGCTATGTTAACAAGAGATTGGAGTATCAGGAAAATGATGAATCGCCTAAAGAAGATTCAGAATCTAATGAACCTGAAGAGCCTCAAGAAAATGAGGAACAAGCTGAGGAAGTCAATGAGGAATCACCAGTAATAGAAGAAGAAACACAACCTAAGGAAAAGGAAGTTGAGCCTCCTCCTTTGATATCAACAGATGATGCTATAGATGATTTGTTGGGTCTTCATGAAATAAACCCAAAAGCTATGGAAATGGAGGAAAGCAATGCTATGGCTCTTGCAATTGTACCACCCGGTGGAAATAATCCAAACAATCTTGCCTTAAGTAACATTGAAGGGACAAATGGTTGGGAACTTGCATTGGTTGCAACACCAAGTAATCATACTAGTCAAGCTGTTGATCGCAAAATGGCTGGTGGTTTTGACAAGCTATTATTAGACAGTTTATATGAAGATGAAAATGCTAGGAGACAACTTCAGCTCCAAAATGCAGGTTATGGACATGGGGAAGCAATGGACATACACAACCCATTTGATCATTATAATAACCAAAATGATCCATTTGCAATGTCTAAAAACATAGCACCTCCACCCAATGTGCAAATGGCACTAATGGCTcaacaacaacaacagcaacagcaagagcaacaaatgatgttccaacaacaacaacaacaaatgatgtaccaaccacatcaacacaacaTGATGATGGTCCCTCACCAGCAACAACCATATAACCAATATCCTCAACAGATGCAAGGTTCAAGTTCTCATAATCCATTTGGGGATCCTTTACCCGTACCAAACTATTATCATAGTGCCATGCCCCAAGAGGGAAATTACAATTTAATGTAG 1794 0.3718 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVAYCIHKLSKRLSKTRSWIVAIKTLIVIHRTLREGDPTFREEILNYSRRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKSSPAVNKAHSRTRSLANDDLLEQLPALQQLLYRLIGCQPEGCAYNNYIVQYALALVLKESFKIYCALNDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPILRQPPPSFLATMEEYIKEAPQTGYVNKRLEYQENDESPKEDSESNEPEEPQENEEQAEEVNEESPVIEEETQPKEKEVEPPPLISTDDAIDDLLGLHEINPKAMEMEESNAMALAIVPPGGNNPNNLALSNIEGTNGWELALVATPSNHTSQAVDRKMAGGFDKLLLDSLYEDENARRQLQLQNAGYGHGEAMDIHNPFDHYNNQNDPFAMSKNIAPPPNVQMALMAQQQQQQQQEQQMMFQQQQQQMMYQPHQHNMMMVPHQQQPYNQYPQQMQGSSSHNPFGDPLPVPNYYHSAMPQEGNYNLM 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01501 597 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Cca08g01501 597 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 584 IPR045192 GO:0048268|GO:0072583
Cca08g01501 597 Gene3D - 5 161 IPR008942 -
Cca08g01501 597 MobiDBLite consensus disorder prediction 323 379 - -
Cca08g01501 597 Coils Coil 516 538 - -
Cca08g01501 597 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Cca08g01501 597 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Cca08g01501 597 SUPERFAMILY GAT-like domain 178 309 - -
Cca08g01501 597 SMART enth_2 30 161 IPR013809 -
Cca08g01501 597 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 584 - -
Cca08g01501 597 Gene3D ANTH domain 174 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cca08g01501 597 MobiDBLite consensus disorder prediction 327 357 - -
Cca08g01501 597 CDD ANTH_N 32 154 - -
Cca08g01501 597 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01501 Cca-Chr8 44343766 44349843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01501 K20044 - gmx:100783084 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01501 08 44343766 44349843 Cca08g01501 08 44343766 44349843 ECH
Cca11g02432 11 51282671 51288828 Cca08g01501 08 44343766 44349843 PCT