Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02431 ATGCCGCCGGCTCTGATGGATCCGCCTTTGCCGGAATTGTCGTCGGTGCCGTCTTTAAGCTCCGGCGCCGTTTCTCCGGGATCGGCGCCGGAGAGTCGGCCATTTGGGGATCTTAGAGGTTTGCAGTGGCGAATAAATCTTGGGGTGTTGCCAtcttcttcttcttctacttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcCATTGATGATCTTCGTCGTGCCACGGCTAATTCTAGAAGGAGGTATGCCAGTTTGAGAGGGCGCCTCCTGGTTGATCCTCATATTACAAAGGATGGAAGTAGTTCACCCAATCTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGATGGAGAGGATGGTTGATCAGGATTTATCGCGTCTATACCCAGAACATGGCAACTACTTCCAGACTCCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCTCAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTTCTCCAATGTGATGTGGAGTGTCTTTCAGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTCATTTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAAAAAATCAGACTTGATGAAGGACGAAATTGACTCCAATGGAAAGTCAATGAAAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACAGAAGATTGTATTGCTAAGTGACGCATATGGGGCTGAAGGTGAATTGGGCATTGTTTTATCTGAGAAATTCGTCGAACATGATGCTTACTGTATGTTTGATGCTCTAATGAATGGGTCTCGTGGGTCAATTGCAATGGCTGATTTCTTCTCCTATTCCCCTGTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGCATGGCCATCTCGTTGATCTTGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTCAGCAACCTCTTGATAATCTGGGATGAAATATTTTCATCAGATAACAGTAAAGTGGAAAAACACGCTGACGACAATGCAGACTCTGGTTTTAGGATCTTTCATTCGTCTCGTGGAGCATTTATCACAGCTATGGCTGTAGCAATGATGCTTCATTTAAGATCTTCACTACTTGCAGCTGAAAATCCTACAACTTGTCTCCAGAGATTATTAAACTTCCCTGAGGACACTGACATTGGAAAACTAATAAGGAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTGAGATTTCATCCACAATGCCTTCACTTGTTGAGTATCATAACCAGGGTAAAACAGTTTTGCAAAGATCTCGGACCCTCTCATCTGAATCAAGTTCACCAAAAACTCCTCTGAATTTAGTACCTGATAGCTACTGGGAAGAAAAGTGGAGGGTTCTCCACAAGGCTGAAGAACTCAAGCAAGATGGAGTAGAAAAACAGGTGCCAACTCGGAAGAAGGGATGGACAGATAAGGTAAAGTTTAGTTTGAAAAGAACAGCATCTGACCCCTCTTCATCAAAGATTAAAAGTGGTAAAAAGGAATCCATAGCATCGGGTAGGCGCAGTTTGTTAGAAGATCTCTCTAAGGAACTTGGCTTAGAGGAAGATAATGAAAAACCGCACTGTCGTGATAATATGTCTGCAATAGTTGAAGAGGAGCAACTGTGTGATAACTCCGAATGCAGCAACAAGTATTCTCCCGAAGATAGATGTAGCAGTGAGGACAACTCATCTGTTATTTCTTGCCCATCTAGTCCTCCTAATGAGGCCCATGATCAAAAAATTGACTCCGAGATAAGTAATGATGGGTCTAACTTATCCCTTGATGGAATTGATGAATGTGCATTTAGTAGTCCTATGGGTTCACTTCTTCCAATCTCTGATGATCCTGAGAATGTATCTCAGACACCAAGGAGCAATGATATTAATAATTCTGCAGGAAATTCAACCACACACTCGAATGAGAGAAAATTGAACAAATTTCAGTGGCTACGGAGGTTCGGGTGGAGTAATGACGAGTGTATGTCAGAGAAAGGAAGCAATGCTTCTGAGGCTGTAAAACCTGACAGTGATTGTAATAATCAAGGTAACACAATACCCTGTTCTACAGTCAATGGACATTGTAGTTCTGTTAGTTGCGACGGGGAATCTGCAGACCAAAATGTGATGAGCACAGTGAGGAATATTGGGCAAGCAATGCTTGAGCATATCCAGGTGATTGAGTGTGCTCTCCAACAAAACCAGGGCCAGGGAGCATCATTGGATAACATTGAAAGGCAGGTTACTGCCATGTCAGCTCTCAAGGAGCTCCGCAAAATAAGCAGTCTTTTGTCTGAGATGTGA 2514 0.4189 MPPALMDPPLPELSSVPSLSSGAVSPGSAPESRPFGDLRGLQWRINLGVLPSSSSSTSSSSSSSSSSSSSSSSSSSSIDDLRRATANSRRRYASLRGRLLVDPHITKDGSSSPNLVMDNPLSQNPDSTWSRFFRNAEMERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLYVLQCDVECLSEVRKLYEDHFTDRFDDLICQENDLSYSFDFKKSDLMKDEIDSNGKSMKIKSLDELDPKIQKIVLLSDAYGAEGELGIVLSEKFVEHDAYCMFDALMNGSRGSIAMADFFSYSPVPGSHTGLPPVIEASAALYHLLSHVDSSLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFSSDNSKVEKHADDNADSGFRIFHSSRGAFITAMAVAMMLHLRSSLLAAENPTTCLQRLLNFPEDTDIGKLIRKAKSLQALALSTEISSTMPSLVEYHNQGKTVLQRSRTLSSESSSPKTPLNLVPDSYWEEKWRVLHKAEELKQDGVEKQVPTRKKGWTDKVKFSLKRTASDPSSSKIKSGKKESIASGRRSLLEDLSKELGLEEDNEKPHCRDNMSAIVEEEQLCDNSECSNKYSPEDRCSSEDNSSVISCPSSPPNEAHDQKIDSEISNDGSNLSLDGIDECAFSSPMGSLLPISDDPENVSQTPRSNDINNSAGNSTTHSNERKLNKFQWLRRFGWSNDECMSEKGSNASEAVKPDSDCNNQGNTIPCSTVNGHCSSVSCDGESADQNVMSTVRNIGQAMLEHIQVIECALQQNQGQGASLDNIERQVTAMSALKELRKISSLLSEM 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02431 837 MobiDBLite consensus disorder prediction 614 659 - -
Cca11g02431 837 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 122 306 - -
Cca11g02431 837 MobiDBLite consensus disorder prediction 685 712 - -
Cca11g02431 837 MobiDBLite consensus disorder prediction 50 82 - -
Cca11g02431 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 325 465 IPR035969 -
Cca11g02431 837 MobiDBLite consensus disorder prediction 676 712 - -
Cca11g02431 837 MobiDBLite consensus disorder prediction 564 578 - -
Cca11g02431 837 MobiDBLite consensus disorder prediction 1 37 - -
Cca11g02431 837 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 774 - -
Cca11g02431 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 350 IPR035969 -
Cca11g02431 837 SMART tbc_4 69 436 IPR000195 -
Cca11g02431 837 MobiDBLite consensus disorder prediction 50 83 - -
Cca11g02431 837 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 774 - -
Cca11g02431 837 MobiDBLite consensus disorder prediction 629 647 - -
Cca11g02431 837 Gene3D - 329 473 - -
Cca11g02431 837 Pfam Rab-GTPase-TBC domain 289 389 IPR000195 -
Cca11g02431 837 Pfam Rab-GTPase-TBC domain 139 222 IPR000195 -
Cca11g02431 837 ProSiteProfiles TBC/rab GAP domain profile. 33 390 IPR000195 -
Cca11g02431 837 MobiDBLite consensus disorder prediction 556 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02431 Cca-Chr11 51272285 51276703 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02431 K18469 - gmx:100816501 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02431 11 51272285 51276703 Cca11g02431 11 51272285 51276703 ECH
Cca11g02431 11 51272285 51276703 Cca08g01505 08 44374780 44380417 PCT