Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01505 ATGCCGCCGGCGCTGTCGGATCCGTTGTCGGCGTCTCCGCCGAGCTCCGACGCCGTTTCGCGGCGATCGGCGCCGGAGAGTCGGCGATTCGGTGATCTTAGAGGGTTGCAGTGGAGAATAAATCTTGGGGTGTTGCCGTCTTCGACTTCGACTTCCATTGATGATCTTCGTCGAGTCACCGCTAATTGTAGAAGAAGATATGCTGGCTTGAGAAGGCGCCTTCTGGTTGAACCACATGTTCCAAAGGATGGAGCTAATTCACCTAATCTGGTCATTGACAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTATCGCGTTTATACCCAGAACATGGCAGTTATTTTCAGACACTGGGATGCCAAAGCATGTTGAGACGAATTTTATTACTGTGGTGTCTCAGGCATCCAGAATTCAGTTATAGACAAGGAATGCATGAATTACTTGCCCCTCTGCTTTATGTTCTCCAAGTTGATCTGGAGCGTCTTTCAGAAATTCGGAAGCTTTATGAAGATCACTTTACGGATAGATTTGATGGCCTTTTATGTCAAGACAATGATCTTTCTTACAGTTTTGATTTTAGAAAATCTCCAGAATTGACAGAGGATGAATTTGATTCACGTGGAAATGCTGTGAAAGTCAATAGTCATGGTGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCCTACGGAGCTGAAGGTGAACTAGGTGCTGTTTTGTCTGAGAAATTCATGGAACATGATGCATTCTGTATGTTTGACGCTTTGATGAGTGGTGCCCATGGTTCAGTTGCAATGGCCGATTTCTTCTATTCCTCTCCTGTATCTGGGTCCCATAGCAGCTTGCCTCCTGTGATTGAAGCTTCTACTGCATTGTATTATTTGTTGTCTCTTGTAGATTCATCTCTCCATAGCCATCTTTTTGATCTTGGGGTTGAACCCCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTTGCCAACCTCTTGATCATCTGGGATGAGATCTTTGCATCGGAGAATAGCAGCATGGAAAAAGGTGCTGTTGACTGTGAATTCAGGATCTTAAGTTCACCTCGGGGAGCATTTATCTCAGGGATGGCAGTAGCAATGTTACTTCATTTAAGATCTTCACTACTTGCAACCGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTTCCTGAAGATGTTAATATTGAAAAACTACTAGAGAAGGCCAAATCCTTGCAGGGGCTTGCACTGAGTGTTGATATTTCATCCTCATCACTTTTGTATATAGGGTTTCATTTCCAGAATAAATCACTGTTTACTAGATCTGTGACCCTTCCATCTGAATCCGTGTCTCCAAAAACATCTCTGAATGTGTTACCTGATAGCTATTGGGAAGAAAAGTGGAGGGTTGCCCAAAGGGCTGAAGAGCTTAGGCAAGATGGTCTACAAAAACAGGTTCCCACTCGAAAAAAGGGATGGGCTGAAAAGGTTAAATTCAGTTTGAGAAGGGCAGAATCTGGCCCTCCTTCGAGGATTCAGGGTGGCAAAAAATTTAGGCGCAGTTTGTTGGAAGATCTTCGCAAGGCACTCGGCTCAGATGAAGATGCAGAGCAAATGCAGCCAGATGAAACCCTATGCCAGCATGATAATCCTTCTGAAACAGTTGAAGTACAAGAAGATGGCTGTAATGGAGACAACAATTACTCGTCTGATGATAGATCTCCAAGTGGAAATTCTGGCAGTGAGGGAGACTTGTCTATATTTTCTGATCCAACTAGTCCCCCTAATGAGGCCAATGATCATGAAATTACCTCAGGGAAAAGTAGTGTTGCATCCAATTCATCCCTTGATGAAGTCAATGAAACTTCATCCTTCACAATCTCCGATCCCCCTGAGAACATTTCTCAGACATCACAGTGCAATACTGGAAATTCTGAATGCAATGAAACTTCAGATACCAGTCCCAATGATCCACCTCTTCCAATCTCTGGTCCTCCCGAGAACATAGCGCTGGTGTCAGGGTGCAATAACGATCATGCAGTAAAAACAGCCACATCTCCTAAAGAGAAAAAACAGAATAAGTTTCAGTGGTTGTGGCCATTTGGTCGGAATGCTACTGAGGCTACCTCTGACAAAGTCGGAGGTGCTGCTGAAGCCACCAACCAATGCAGCAATCAAAATAATACTCCACAGCCATCGTCATCTTCGGCTAATGAGCATGGTAGTTCAGTTAGTTGCAGAGGAGAATCTGTCGACCAGAATGTGATGGGCACTTTGAAGAATATTGGGCAGACTATGCTAGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGAACGCAAAGGCCAAGTTACTGCCATGACAGCTCTCAAAGAGCTTCGGAAAATTAGCAATCTTCTGTCTGAGATGTGA 2490 0.4382 MPPALSDPLSASPPSSDAVSRRSAPESRRFGDLRGLQWRINLGVLPSSTSTSIDDLRRVTANCRRRYAGLRRRLLVEPHVPKDGANSPNLVIDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQTLGCQSMLRRILLLWCLRHPEFSYRQGMHELLAPLLYVLQVDLERLSEIRKLYEDHFTDRFDGLLCQDNDLSYSFDFRKSPELTEDEFDSRGNAVKVNSHGELDPEIQTIVLLSDAYGAEGELGAVLSEKFMEHDAFCMFDALMSGAHGSVAMADFFYSSPVSGSHSSLPPVIEASTALYYLLSLVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLANLLIIWDEIFASENSSMEKGAVDCEFRILSSPRGAFISGMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDVNIEKLLEKAKSLQGLALSVDISSSSLLYIGFHFQNKSLFTRSVTLPSESVSPKTSLNVLPDSYWEEKWRVAQRAEELRQDGLQKQVPTRKKGWAEKVKFSLRRAESGPPSRIQGGKKFRRSLLEDLRKALGSDEDAEQMQPDETLCQHDNPSETVEVQEDGCNGDNNYSSDDRSPSGNSGSEGDLSIFSDPTSPPNEANDHEITSGKSSVASNSSLDEVNETSSFTISDPPENISQTSQCNTGNSECNETSDTSPNDPPLPISGPPENIALVSGCNNDHAVKTATSPKEKKQNKFQWLWPFGRNATEATSDKVGGAAEATNQCSNQNNTPQPSSSSANEHGSSVSCRGESVDQNVMGTLKNIGQTMLDHIQVIESVFQQERKGQVTAMTALKELRKISNLLSEM 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01505 829 Gene3D - 305 443 - -
Cca08g01505 829 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
Cca08g01505 829 MobiDBLite consensus disorder prediction 579 698 - -
Cca08g01505 829 MobiDBLite consensus disorder prediction 1 28 - -
Cca08g01505 829 Pfam Rab-GTPase-TBC domain 264 367 IPR000195 -
Cca08g01505 829 Pfam Rab-GTPase-TBC domain 114 173 IPR000195 -
Cca08g01505 829 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 9 768 - -
Cca08g01505 829 SMART tbc_4 20 409 IPR000195 -
Cca08g01505 829 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 98 283 - -
Cca08g01505 829 MobiDBLite consensus disorder prediction 579 682 - -
Cca08g01505 829 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 768 - -
Cca08g01505 829 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 438 IPR035969 -
Cca08g01505 829 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Cca08g01505 829 MobiDBLite consensus disorder prediction 745 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01505 Cca-Chr8 44374780 44380417 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01505 K18469 - gmx:100812967 1346.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01505 08 44374780 44380417 Cca08g01505 08 44374780 44380417 ECH
Cca11g02431 11 51272285 51276703 Cca08g01505 08 44374780 44380417 PCT