Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02428 ATGGCGGGTATATATAGTGAGTTTGGTGTGGAGGGTGAGGCTGACAAGACAAAGGTTTTTTCATCCATAAAATACATGATGGAAACAAGAATTGTGCTGGCAAAGCCATTCACGGTAGAGAGTGAATCAGATCCTCCGGACGCAAATTATAAAGCTCCAAACTTTTTGCGGCGCATACTAACTCTCTTTAAGAATGTGCGCCCAGGATCTGATGTCTCCTGCTTCAAGCTGCCACCTGTGTTCAACATGCCGAAGTCAGAGCTTCAGTGCTATGGGGAGTGTGTATATTCCACAACATCAAACTTGCTAAGCATAATCAACAGTGGGAAGACATCAATGGATAGATTCATATCTGTTGTAGCATGGAGCATTTCTACAGTACGCCCCCTATGGTTTGGACTGGCTCCCTACAATCCCACACTTGGTGAAACTCACCATGTTTCCAAAGGAAACCTTAATGTCTTACTCGAGCAGGTTTCACATCACCCTCCGGTATCTGCTCTCCATGCCACCGATGAAAAGGAAAATATAGAAACGATATGGTGCCACGCTACTGTTCCAAAATTCACTGGTGCATCAGTAGAAGCTCATGTGCATGGCAAACGGCAGCTGAAGCTCCATAATCATGGAGAGACATACGAATTGAATTCTCCTAATTTTCTTATCAGAATGCTTCCAGTCCCTGGAAATGATTGGATAGGCAATGTTAATATCAGGTGCCCACAAACAGGCCTAGTGGCAGAATTAAGCTACACAACTCAATCTTTCTTTGGGTTTGGGGCAAGTGGAAGAACGATTAAAGGGAAGATCTTTGATTCAAACTCCATGAAACTTCTGTACAAAGTTGAAGGTCATTGGGATAGTACTGTAACGTTGAAGAATACAGACAATTCAGACGTAAGAGTGATATATGATGCAAAACAAGTTATTTCAGGGCTCCAACCTCCTATTGTCAAGGATCCAGAGAGTGTGTGGCCAACAGAAACAGCTCTTGTTTGGGGTGAGTTGAGCCAAGCCATTTTGAGCAAAGACTGGGAAAAAGCTAGAGATGCAAAGAAAAGTGTTGAGGAAAGACAGAGGGAGCTGCAGAGAGAAAGAGTGTCAAAAGGACAAAGTTGGGTTCCTAAACACTTCATTGTGTCTTATACCAAAGAAAAGGGTTGGGACTGTTCACCCATTCAAAAGTGGGTCCAAAATGCCCCTATCGTTATCATGTAA 1218 0.4327 MAGIYSEFGVEGEADKTKVFSSIKYMMETRIVLAKPFTVESESDPPDANYKAPNFLRRILTLFKNVRPGSDVSCFKLPPVFNMPKSELQCYGECVYSTTSNLLSIINSGKTSMDRFISVVAWSISTVRPLWFGLAPYNPTLGETHHVSKGNLNVLLEQVSHHPPVSALHATDEKENIETIWCHATVPKFTGASVEAHVHGKRQLKLHNHGETYELNSPNFLIRMLPVPGNDWIGNVNIRCPQTGLVAELSYTTQSFFGFGASGRTIKGKIFDSNSMKLLYKVEGHWDSTVTLKNTDNSDVRVIYDAKQVISGLQPPIVKDPESVWPTETALVWGELSQAILSKDWEKARDAKKSVEERQRELQRERVSKGQSWVPKHFIVSYTKEKGWDCSPIQKWVQNAPIVIM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02428 405 Gene3D - 325 399 - -
Cca11g02428 405 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 27 403 IPR000648 GO:0008289
Cca11g02428 405 Coils Coil 345 365 - -
Cca11g02428 405 SUPERFAMILY Oxysterol-binding protein-like 58 390 IPR037239 -
Cca11g02428 405 Coils Coil 403 405 - -
Cca11g02428 405 ProSitePatterns Oxysterol-binding protein family signature. 157 167 IPR018494 -
Cca11g02428 405 Gene3D - 138 319 - -
Cca11g02428 405 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 27 403 - -
Cca11g02428 405 Pfam Oxysterol-binding protein 65 316 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02428 Cca-Chr11 51231440 51236622 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02428 K22285 - gmx:100819769 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02428 11 51231440 51236622 Cca11g02428 11 51231440 51236622 ECH
Cca11g02428 11 51231440 51236622 Cca08g01509 08 44504028 44510760 PCT