Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01509 ATGGTGAAAATGGAAGAGAAGAAAATAGTGCTGACGAAGCCAATGACAATAGAAAAGGAATCAGATTCAGACGCGTCTTATAAAGCTCCTAATCTTATGCAACGCATTCTCAGTTTATTCAAAAATGTACGCCCAGGATCTGACCTCACACGCTTTCAGCTGCCACCACTTTTCAACTTGCCAAAATCACAACTACAGTGTTATGGTGAATCAGTGTACTGCACAGGCTCAGACTTGTTAAGCATGTGCAACAGAGGGCAGAGTCCTTTGGATAGGTTCATATCTGTGGTAGCATGGAGCATATCTACCACTCGCCCTGTGATTTTTGGGGTTGCTCCTTATAATCCTATTCTTGGTGAGACACACCATGTTTCAAAGGGAAATCTTAATGTCTTATTGGAACAGATTTCACATCACCCTCCAGTATCTGCTCTCCATGCAACAGATGAGAAGGAAAACATTGAAATGATATGGTGCCAGAGACCTGATCCAAAGTTTAATGGCACATCAGTGGAAGCTAAAGTGTATGGTAAACGGCAACTGAAGCTACTAAATCATGGTGAAACATATGAAATGAATTGTCCTCATCTTGTACTTAGAATTCTTCCCGTAACTGGGGCTGATTGGGCTGGCACAGTAAGTGTACGGTGTGTAGAGACAGGCCTAGTAGCTGAGTTATCATACAGATCAAGTCATTCTTTTCTAGGAATCGGGGGCAATCATAGAGTGGTCAAAGGGAAGATCTGTGATTCTTCATCGTTGAAACTTCTATTTGAAGTTGATGGTCATTGGGATAGTACCGTAAACTTGAAGGATACAAGTGATGGGAAAGTAAGAGTTATATATGATGCAAAGGAAGTTTTTTCAGGGATCGGAGCTCCTATACTCAAGGATTTGGAGAGTGTGTGGCCAACAGAATCAGCCAATGTTTGGGGTGAATTGAGCCAAGCCATTATGAGTCAAGACTGGGAGAAAGCCAGAGATGCAAAGCAGAAAGTTGAGGAAAAACAAAGGGAGCTCGTGAATGAAAGAGAATCAAAAGGAGAAACTTGGATTTCTAAGCATTTTGTAGTATCTAACAACAAAGAAGGGTGGGAATGTTCACCTATTCATAAGAGTGTACCAGCTGCCCCCATCATAGTCCAATAG 1149 0.4186 MVKMEEKKIVLTKPMTIEKESDSDASYKAPNLMQRILSLFKNVRPGSDLTRFQLPPLFNLPKSQLQCYGESVYCTGSDLLSMCNRGQSPLDRFISVVAWSISTTRPVIFGVAPYNPILGETHHVSKGNLNVLLEQISHHPPVSALHATDEKENIEMIWCQRPDPKFNGTSVEAKVYGKRQLKLLNHGETYEMNCPHLVLRILPVTGADWAGTVSVRCVETGLVAELSYRSSHSFLGIGGNHRVVKGKICDSSSLKLLFEVDGHWDSTVNLKDTSDGKVRVIYDAKEVFSGIGAPILKDLESVWPTESANVWGELSQAIMSQDWEKARDAKQKVEEKQRELVNERESKGETWISKHFVVSNNKEGWECSPIHKSVPAAPIIVQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01509 382 Pfam Oxysterol-binding protein 39 311 IPR000648 GO:0008289
Cca08g01509 382 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 3 380 - -
Cca08g01509 382 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 3 380 IPR000648 GO:0008289
Cca08g01509 382 SUPERFAMILY Oxysterol-binding protein-like 34 368 IPR037239 -
Cca08g01509 382 ProSitePatterns Oxysterol-binding protein family signature. 134 144 IPR018494 -
Cca08g01509 382 Gene3D - 118 290 - -
Cca08g01509 382 Gene3D - 303 375 - -
Cca08g01509 382 Coils Coil 323 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01509 Cca-Chr8 44504028 44510760 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01509 K22285 - gmx:100813724 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01509 08 44504028 44510760 Cca08g01509 08 44504028 44510760 ECH
Cca11g02428 11 51231440 51236622 Cca08g01509 08 44504028 44510760 PCT