Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02426 ATGGGGGCTTGTTTGTCTTGCAACTCATCCTCCACATTCAAGAACATCCGTGTGGTTCATCTCAATGGTTATGTAGAGTACTTTGAGCAAACCATTTCAGCTAGGGAAGTAATTGGATACCCCTCAAACCACTTTGTTTGCACCTCCACTCAGCTTCTTTCATCCTCTTCATCAAAATCATTGAATGGAGACACACATCTCCAACCGGGGCAAGTGTATTTGATGCTACCATACTCAGTGTTGCAACCTGATGTGTCTCCTGTGGACTTGGCTGGCCTTGCAAAGAGACTCACCACAATAGCCAAAGCAAGTCCTTTGTCAAGCCAAACAACTCCAACAGTTTGGAGTTCACCCTCCGAGAGTCCTCGCAGATTTGGGGTTGTAGAGCAATATGGTGCTTTGAGTGTGGTGAATAAAGGAAGAATCCCTTGTAGAGTTCAAACTTGGAAACCTATCTTGGACACCATCACAGAGAAGCCACTCCATAGGAGAACTGAGTCGGATTTGCAAGAAGACCTTTCATGTTATCGGGGGAATTAG 540 0.4537 MGACLSCNSSSTFKNIRVVHLNGYVEYFEQTISAREVIGYPSNHFVCTSTQLLSSSSSKSLNGDTHLQPGQVYLMLPYSVLQPDVSPVDLAGLAKRLTTIAKASPLSSQTTPTVWSSPSESPRRFGVVEQYGALSVVNKGRIPCRVQTWKPILDTITEKPLHRRTESDLQEDLSCYRGN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02426 179 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 170 - -
Cca11g02426 179 PANTHER OS06G0700300 PROTEIN 1 170 - -
Cca11g02426 179 Pfam PADRE domain 1 158 IPR025322 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02426 Cca-Chr11 51218845 51219815 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02426 - - gmx:100785670 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02426 11 51218845 51219815 Cca11g02426 11 51218845 51219815 ECH
Cca11g02426 11 51218845 51219815 Cca08g01510 08 44513674 44514748 PCT