Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02421 ATGGCAACTGAGAGTCCAATTAGGATCTCAGAAGCTGGGGGTAAATGGCCGTCTCTTAAGGAAGCTGCGACGTTTGGTGCACCATCTCGTCACATGGCAACAGAGGATATGGGTATATTTTTGAATGGTCATAGGTTCCATGGCAGTGGAAAGGATGTGGTCCCCAATCGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTTGCCATAGAAAACTTATTATCCCATAACACAACCAGGAATGCAAGCTTGGGATCTCTGAACAGAGCTATGCAAAAATATGATAGCGGTAAAGGTTCTTTTCATTTGCCACGAGGAACACTTGCAACACACAGGGAGGAGTCCGAAGATGATTCAACTCCACAGCTGTATGATAATGAGTTAGATAAGACTAGTGGAAAATGGCATAGACAGGATGTGGCTTCAACATCATCTCAGCACAAAAATTTAGTACCGGAAGATCTTCCCAATACCATGTCAACTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTATTTGACATAGATACTGGTTCCAGTTCCTCTACAGTGGATACTGTAAAACCTACCATAGGCGAAGATGATATAAGGCTGTCATCAACTGTTGATTCTCCTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCACTGGAAGCATGGGCTTTAATGACTTAGATGTTACAATTGTAGAATCTCAAGTAAGGGCTCTCAGTGTATCTAATCTACCAAACTCAGAAAGCCAGAGTAATGAAGATAAATGGAAGAGCAGCTGCCAGAATAATTTGATGCAACATCAGCAACAAAATTATCCACATGAAGTTCCGAGCACCAATTCTCAAAGTGAAAAAAGTGCATATGTTGGTATGGAACATTATCTTCACAATCCCAACAAGTTCTCCTCTGACGTACAGCCTGTACTGCAATCATCAGGGTTTACACCTCCACTATATGCTTCAGCAGCAGCTTATATGACCTCAACAAATCCATTTTACACTAATTTGCAGGCCTCAGGCATATATTCTCCACAATATGTAGGTGCGTACCCGTTTAATCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGATGGGGCTACCGGTAATAGTTTTACTCCCCAAGCACCAGGGGTTTCTCCGACTGCAGGAAACATTTCACACGGCGCTGAAAGGATACATGCAAACAATTTGTTTGGACAATTTGCATTTCCTCTGCAGCCTTCTTTTGGTGATCCTATTTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTGTATCTGGTCATCTGATGGCACCTAGAGCCAATGTTGGTGGCCAAATTGGTCCCCTTGATTCCCAGAAAGGGCCCAATAGTGGGGCTTACCTGGATGACAAAAAATTACATAATCAGAGAAGTGGTGCTAATTTGAATCCTAATAGAGGTGGGGTAATACTTCCTGGTTATTTTGGACACCCTTCAAATATGGGTTTCGTAACCCAGTATCCAGGTTCCCCACTTTCTAGACCAGTTTTATCAGGATACCCAGAAGGCAGTCCTGGCCTTCTAGGTGGAAGGAATGAAATGAAACTCTCTCCAGCTTCTGGTAGGAATGGAGGTTTATTATCTGGATGGCATGGTCAAAGAGCCTTTGACATTGCTCATGACCCCAAAATTGCTATTTTCCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAACTATCTGATATTATTGGACATATAGTTCAATTTAGCACTGATCAGCATGGGAGCCGTTTTATACAGCAGAAGTTGGAAAGCTGTGGTGTTGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAATTAATGACTGATGTATTTGGCAACTATGTAATCCAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGAACTTGCAAATCGACTTCTTGGTCAGATACTGCCTTTAAGTCTGCAAATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGATCTTGAACAGAAAGTTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTCAGAGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTGCAAATATTGACTTTATAATAACTTCTTTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTTGAGCATTGTTCAGATGAGGTTCAGTGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGTAATTATGTTACTCAGCATGTGTTGGAGAGAGGAAAGCCTCAGGAAAGGGGCCAAATTATTAACAAGCTGTCAGGACATATTGTCCAATTAAGCCAGCACAAATTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGCTGATGCCTCTGAACGGCAGTTGTTAATCGCAGAGATTGTTGGACATGACAAACAAAATGATAATTTATTGACAATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAAGGTTCTTGAGATCTGTTCCGAAAATCAGCGAGCAATGTTACTTTCTCGCGTAAGACTTAATGCTCATGCTTTAAAGAAGTACACTTACGGAAAACACATTGTGGCTCGGTTTGAACAGCTACTTGGAGAAAACCAAACACCTGGATCATGA 2739 0.4162 MATESPIRISEAGGKWPSLKEAATFGAPSRHMATEDMGIFLNGHRFHGSGKDVVPNRSGSAPPSMEGSFLAIENLLSHNTTRNASLGSLNRAMQKYDSGKGSFHLPRGTLATHREESEDDSTPQLYDNELDKTSGKWHRQDVASTSSQHKNLVPEDLPNTMSTVYNKSLGVVDELFDIDTGSSSSTVDTVKPTIGEDDIRLSSTVDSPAPVTSSSSLNSTGSMGFNDLDVTIVESQVRALSVSNLPNSESQSNEDKWKSSCQNNLMQHQQQNYPHEVPSTNSQSEKSAYVGMEHYLHNPNKFSSDVQPVLQSSGFTPPLYASAAAYMTSTNPFYTNLQASGIYSPQYVGAYPFNPTAVPPYIAAYPPHGSVPLVDGATGNSFTPQAPGVSPTAGNISHGAERIHANNLFGQFAFPLQPSFGDPIYMQYHQQPFVEGYGVSGHLMAPRANVGGQIGPLDSQKGPNSGAYLDDKKLHNQRSGANLNPNRGGVILPGYFGHPSNMGFVTQYPGSPLSRPVLSGYPEGSPGLLGGRNEMKLSPASGRNGGLLSGWHGQRAFDIAHDPKIAIFLEELKSGKGRRFELSDIIGHIVQFSTDQHGSRFIQQKLESCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANRLLGQILPLSLQMYGCRVIQKALEVIDLEQKVQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTANIDFIITSFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESVFTLAQDQYGNYVTQHVLERGKPQERGQIINKLSGHIVQLSQHKFASNVVEKCLEYADASERQLLIAEIVGHDKQNDNLLTMMKDQFANYVIQKVLEICSENQRAMLLSRVRLNAHALKKYTYGKHIVARFEQLLGENQTPGS 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02421 912 CDD Pumilio 579 899 IPR033712 GO:0003723
Cca11g02421 912 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 903 - -
Cca11g02421 912 MobiDBLite consensus disorder prediction 200 220 - -
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 836 IPR001313 GO:0003723
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 620 655 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 801 836 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 843 878 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 765 800 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 656 691 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 728 764 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 620 655 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 692 727 IPR001313 GO:0003723
Cca11g02421 912 SMART pum_5 584 619 IPR001313 GO:0003723
Cca11g02421 912 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 564 904 IPR033133 GO:0003723
Cca11g02421 912 MobiDBLite consensus disorder prediction 205 220 - -
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 584 619 IPR001313 GO:0003723
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 728 764 IPR001313 GO:0003723
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 656 691 IPR001313 GO:0003723
Cca11g02421 912 Gene3D - 566 909 IPR011989 -
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 837 878 IPR001313 GO:0003723
Cca11g02421 912 ProSiteProfiles Pumilio RNA-binding repeat profile. 692 727 IPR001313 GO:0003723
Cca11g02421 912 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 903 - -
Cca11g02421 912 SUPERFAMILY ARM repeat 579 900 IPR016024 -
Cca11g02421 912 MobiDBLite consensus disorder prediction 101 129 - -
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 703 726 IPR001313 GO:0003723
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 847 878 IPR001313 GO:0003723
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 627 656 IPR001313 GO:0003723
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 770 802 IPR001313 GO:0003723
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 588 622 IPR001313 GO:0003723
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 660 693 IPR001313 GO:0003723
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 805 838 IPR001313 GO:0003723
Cca11g02421 912 Pfam Pumilio-family RNA binding repeat 732 767 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02421 Cca-Chr11 51095435 51104804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02421 K17943 - gmx:100819166 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02421 11 51095435 51104804 Cca08g01523 08 45070185 45083052 PCT