Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01523 ATGGCAACCGAGAGTCCTATTAGAATCTCAGAAGCTGGGGGTAAATGGCCCTCTCACAACAAAGCTGCAGCGTTTGGTTCACCATCTCGTAACATGGTGACAGAGGATTTGGGTATACTTCTGAAGGGCCATAGGTTCCATGGTGGTGGACAGGATGTGGCACCTAATCGCAGTGGCAGTGCGCCTCCCAGCATCGAAGGCTCTTTTCTGGCCATAGAAAACCTCTTAGCCCAGCAGAACACCACCCAGAATGCAAGCTCCTCAACTCTGAGCAGCATCATGCAAAATTGCGAGTCTGAAGAGCAATTGCGAGCCGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCTCTTACGTCGTGGGAAAATCGCCATCTAGGACGTCATAGTGGCAGTTTTAGAAATAATTGGAGATTGTCTACTGCAGATGATAGTGGTAAAGTTCCTTTACATTTGCCTCAAATGACTCTTTCCACACACAGGGAGGAGTCTGAAGATGATTCACCCCAACAGTCATATGATGACGAATTTGTTAAGGCAAGTGGAATGAGGCGTAAATCTGATGCAGCTTCGTTGGCATCTCAGCTCAAAAATGTGGTTGATTTAATTCAGGAAGATTTTCCTCGTACCATGTCACCTGTATATAATAAGTCTCTTTCTGTAAGTCATGGACTAGTGGATAAACCAATTGACTTAGAGGTCGGTTCTAGTTCTTATCATAACCCCCCTTTTACTGCAGTAGAGGCTGCTAAATCTACTGTAGGTGCTGATGATATAAGGTTGTCATCAAGTATTGATACCCATGCCCCTGTTGCAAGTTCATCATCTCTTGAATCCACAGGCAGCATTGATGTTAGTGACTTAGACGTTGCAACTGTTGAATCTCAACTAAAGGCTCTTGGTGTATCTAATCTACCAAATCCAGAAAGTCTGAATTACGAAGAAAAATGGAAGACCAGCTACCAGAACAACATGATGCAACACCAGGGATGCCAGCAACAAAACAATCAATCTGATGTTCCTAGTGCCAATTCTCAAAACATAAATTCTGCATACGGTGGTAGGGAACAGTTCCCTTGTAATTCTAGCAAGTTCTCCAATGTCCAGCCACTACTGCAGTCATCTGGGTTTACACCTCCCCTATATGCCTCAGCAGCTGCTTATATGACCTCAACAAATCCGTTTTATGCTAATATGCAGGCCTCAGGTATATATACTCCACAATATGTTGGTGGATACACTGTAAACCCCACAGGTTTTCCTCCATATATTACTGCATACCCTCCTCATGGTGCTGTACCCCTTGTTGTTGATGGGGCTACTAGTTCCAGTTATACTCCACTAACACCAGGGGTTTCAACTGGGGGAAGCATTTCACATGGAGCTGAAATGCTTCAGACAAACAAGTACCTTGGGCAATTTGGATTTCCTCTACAGCCTTCTTTTGCTGATCCTTTGTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCTCTCACACCTAGAGCAAGTGGTGTTGGCCAAATCAATCCTTATGATTCACAAAAAAGGCCCAGTACTGGTGCTTATATGGATGATAAAAAATTACCTGATCAGAGAACTGGTGGTAATATGAACTCGAGAAGAGGTGGATTATTGATTCCTAGTTATTTTGGACACGTGCCAAACATGGGTTTTGTAATGCAGTATCCAAGTTCACCTCTCCATAGTCCTGTTTTATCAGGATACCCAGAAGGAAGTCCTGGTCATCCAGCAGTTAGGAGTGAAATAAAACTTTCCCCAGCTTCTGGTAGGAATGGAGGCGTAATATCTGGATGGCAAGGTCACAGATCATTTGACAGTGGTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGAAAAGGTCGAAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCGCTGATCAGCATGGAAGTCGATTTATACAGCAGAAGTTGGAAAGTTGTAGTGTTGAAGAGAAGGCATTGGTGTTTAAAGAGGTTCTTCCACATGCTTCTAAGTTAATGACTGATGTATTTGGTAACTATGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCTGATCAACTGTTTGGCCAGATACTGCCTTTAAGTCTGCAAATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAACTTGTTCTTGAGCTAGATGGAAATGTTATGAGATGCGTTCGTGACCAAAATGGGAACCATGTAATTCAAAAGTGTATTGAATCTATTCCAACCAAAAAAATTAGCTTTATACTATCTGCATTTTGTGGTCAAGTTGCTACCCTTTCAATGCATCCCTATGGTTGCCGAGTCATTCAGAGAGTTCTGGAACATTGCACGGATGAGAGTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACACAGCATGTCTTGGAGAGGGGAAAGCCTCAGGAAAGGAGCCAAATTATCAACAAGTTGACAGGACATATTGTTCAACTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGAGATGCCACTGAACGGGAGTTGCTAATTGCAGAGATCTTTGGGCCTGATGAACAAAGTGATAATTTATTGACAATGATGAAAGACCAATTTGCAAATTATGTGGTTCAGAAGGTCATTGATATCTGTTCTGAAAGTCAGCGAGCAATGTTGCTTTCTCACGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAAGTTGGAGAGAATCAAACATGA 2949 0.4205 MATESPIRISEAGGKWPSHNKAAAFGSPSRNMVTEDLGILLKGHRFHGGGQDVAPNRSGSAPPSIEGSFLAIENLLAQQNTTQNASSSTLSSIMQNCESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGRHSGSFRNNWRLSTADDSGKVPLHLPQMTLSTHREESEDDSPQQSYDDEFVKASGMRRKSDAASLASQLKNVVDLIQEDFPRTMSPVYNKSLSVSHGLVDKPIDLEVGSSSYHNPPFTAVEAAKSTVGADDIRLSSSIDTHAPVASSSSLESTGSIDVSDLDVATVESQLKALGVSNLPNPESLNYEEKWKTSYQNNMMQHQGCQQQNNQSDVPSANSQNINSAYGGREQFPCNSSKFSNVQPLLQSSGFTPPLYASAAAYMTSTNPFYANMQASGIYTPQYVGGYTVNPTGFPPYITAYPPHGAVPLVVDGATSSSYTPLTPGVSTGGSISHGAEMLQTNKYLGQFGFPLQPSFADPLYMQYHQQPFVEGYGISGHFDPLTPRASGVGQINPYDSQKRPSTGAYMDDKKLPDQRTGGNMNSRRGGLLIPSYFGHVPNMGFVMQYPSSPLHSPVLSGYPEGSPGHPAVRSEIKLSPASGRNGGVISGWQGHRSFDSGHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCSVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADQLFGQILPLSLQMYGCRVIQKALEVIELEQKAQLVLELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFCGQVATLSMHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQIINKLTGHIVQLSQHKFASNVVEKCLEYGDATERELLIAEIFGPDEQSDNLLTMMKDQFANYVVQKVIDICSESQRAMLLSHVRIHAHALKKYTYGKHIVARLEHQVGENQT 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01523 982 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 977 - -
Cca08g01523 982 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 637 977 IPR033133 GO:0003723
Cca08g01523 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 693 728 IPR001313 GO:0003723
Cca08g01523 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 838 873 IPR001313 GO:0003723
Cca08g01523 982 MobiDBLite consensus disorder prediction 523 557 - -
Cca08g01523 982 SMART pum_5 657 692 IPR001313 GO:0003723
Cca08g01523 982 SMART pum_5 801 837 IPR001313 GO:0003723
Cca08g01523 982 SMART pum_5 729 764 IPR001313 GO:0003723
Cca08g01523 982 SMART pum_5 916 951 IPR001313 GO:0003723
Cca08g01523 982 SMART pum_5 693 728 IPR001313 GO:0003723
Cca08g01523 982 SMART pum_5 838 873 IPR001313 GO:0003723
Cca08g01523 982 SMART pum_5 765 800 IPR001313 GO:0003723
Cca08g01523 982 SMART pum_5 874 909 IPR001313 GO:0003723
Cca08g01523 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 916 951 IPR001313 GO:0003723
Cca08g01523 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 837 IPR001313 GO:0003723
Cca08g01523 982 SUPERFAMILY ARM repeat 641 974 IPR016024 -
Cca08g01523 982 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g01523 982 CDD Pumilio 652 973 IPR033712 GO:0003723
Cca08g01523 982 PANTHER PUMILIO HOMOLOG 5 45 977 - -
Cca08g01523 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 874 909 IPR001313 GO:0003723
Cca08g01523 982 Gene3D - 638 981 IPR011989 -
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 805 840 IPR001313 GO:0003723
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 878 911 IPR001313 GO:0003723
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 698 730 IPR001313 GO:0003723
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 661 695 IPR001313 GO:0003723
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 733 766 IPR001313 GO:0003723
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 843 875 IPR001313 GO:0003723
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 776 799 IPR001313 GO:0003723
Cca08g01523 982 Pfam Pumilio-family RNA binding repeat 920 952 IPR001313 GO:0003723
Cca08g01523 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 657 692 IPR001313 GO:0003723
Cca08g01523 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 729 765 IPR001313 GO:0003723
Cca08g01523 982 MobiDBLite consensus disorder prediction 336 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01523 Cca-Chr8 45070185 45083052 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01523 K17943 - gmx:100780168 1732.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02421 11 51095435 51104804 Cca08g01523 08 45070185 45083052 PCT