Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02136 ATGGGAGTGGACAACGATTCCACTTCACAATGCAACGACCAACACAGCAAAATCAACTCACTTGTCGTCTTGAATGTTTACGATCTCACCCCTATTAATAACTACCTCTACTGGTTTGGATGTGGCATCTTTCACTCTGGCATTGAAGTGCATGGTAAGGAGTATGGATTTGGAGCGCATGACTTCCCAGCAAGTGGAGTTTTTGAAGTGGAGCCAAGGAATTGCCCTGGATTCATATATAGATGTTCCATCACTTTGGGTCAAACCAATATGAATCCTTCTGAGTTCCGAACATTTATTGAAGACATGGCTTCCAAGTATCATGGGGATACCTACCACCTTATCACTAAAAACTGCAATCATTTTACAGATGATGTCTCCTATAGATTGATTGGGAAAAAAATCCCGGGTTGGGTGAATAGGCTTGCTAAGCTAGGTGCTTTGTGTAGCTGTCTACTTCCTGAAAGTCTTCAAGTTACAAGTGTTAAACAGCTACCTGAGTACCATGAATGCTCGGATGATGACTTTATTGAATCTCTTTCACCTGCCACTCCCCGTGAGTCAACAGAAATAGATGATGAGCAAGAAAAGCACCTTCTTTCATCATCCACTGGAACTGAGGATGTTACTTTCGTTAAAGAGACTCAAGTAAAATAA 657 0.4155 MGVDNDSTSQCNDQHSKINSLVVLNVYDLTPINNYLYWFGCGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRNCPGFIYRCSITLGQTNMNPSEFRTFIEDMASKYHGDTYHLITKNCNHFTDDVSYRLIGKKIPGWVNRLAKLGALCSCLLPESLQVTSVKQLPEYHECSDDDFIESLSPATPRESTEIDDEQEKHLLSSSTGTEDVTFVKETQVK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02136 218 PANTHER DESUMOYLATING ISOPEPTIDASE 14 218 IPR008580 GO:0008233
Cca11g02136 218 Pfam PPPDE putative peptidase domain 22 154 IPR008580 GO:0008233
Cca11g02136 218 Gene3D PPPDE domains 16 169 IPR042266 -
Cca11g02136 218 MobiDBLite consensus disorder prediction 182 218 - -
Cca11g02136 218 ProSiteProfiles PPPDE domain profile. 20 157 IPR008580 GO:0008233
Cca11g02136 218 SMART DUF862_2a 20 158 IPR008580 GO:0008233
Cca11g02136 218 MobiDBLite consensus disorder prediction 202 218 - -
Cca11g02136 218 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 14 218 - -
Cca11g02136 218 MobiDBLite consensus disorder prediction 187 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02136 Cca-Chr11 47195078 47199397 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02136 K22763 - gmx:100778961 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02136 11 47195078 47199397 Cca11g02136 11 47195078 47199397 ECH
Cca11g02136 11 47195078 47199397 Cca03g00755 03 16140579 16143708 PCT