Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00755 ATGGGGATGAAGAGCAACTCCAATTCAACCTCAAAATCTGATAACAATGCCAATGACAACAAAAACACCACACGTGTGGTGTTAAATGTCTACGATCTCACCCCTCTCAACAATTACCTTTATTGGTTTGGATTTGGAATTTTTCACTCTGGCATTGAAGTACATGGAAAGGAGTATGGATTTGGTGCCCATGACTTCCCAGCAAGTGGAGTGTTTGAAGTGGAGCCAAGGAAGTGCCCTGGATTTGTATACAGATGTTCTGTTACTTTGGGAAAAATAAATATGAATCCTTCAGAGTTTCGGACCTTGATTGAGAACATGGCTAATGAGTATCATGGAGACACCTATCACCTTATATCTAAGAACTGCAATCATTTTACGGATGATATTTCGCATAGATTGAGTGGAAAACGGATCCCAGGTTGGGTGAATCGCCTTGCCAGGCTAGGTTCACTGTGCAGCTGTCTACTTCCTGAATGTGTTCAAGTAACTACCGTTAAACAGCTACCTGAATACCATGATTGTTCAGAAGATGAAATTACTGAGTCTCTTTCAACTGCCTCTCCTAGTGGATCAGCATCAGGACTAGATCATGATGAGCAAGAAAAACGCCTTCTGTCACCTATGGCTGGTAGAACAGATAACTTCTCTTTTGTTAAAGAGGCCCCAAAACATGAATGTGTTGGAGGGGAGAAAACACTTGGATAG 708 0.4181 MGMKSNSNSTSKSDNNANDNKNTTRVVLNVYDLTPLNNYLYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFVYRCSVTLGKINMNPSEFRTLIENMANEYHGDTYHLISKNCNHFTDDISHRLSGKRIPGWVNRLARLGSLCSCLLPECVQVTTVKQLPEYHDCSEDEITESLSTASPSGSASGLDHDEQEKRLLSPMAGRTDNFSFVKEAPKHECVGGEKTLG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00755 235 SMART DUF862_2a 24 166 IPR008580 GO:0008233
Cca03g00755 235 Gene3D PPPDE domains 18 176 IPR042266 -
Cca03g00755 235 Pfam PPPDE putative peptidase domain 25 158 IPR008580 GO:0008233
Cca03g00755 235 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 15 222 - -
Cca03g00755 235 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g00755 235 PANTHER DESUMOYLATING ISOPEPTIDASE 15 222 IPR008580 GO:0008233
Cca03g00755 235 MobiDBLite consensus disorder prediction 181 211 - -
Cca03g00755 235 MobiDBLite consensus disorder prediction 181 195 - -
Cca03g00755 235 ProSiteProfiles PPPDE domain profile. 24 161 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00755 Cca-Chr3 16140579 16143708 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00755 K22763 - gmx:100810582 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00755 03 16140579 16143708 Cca03g00755 03 16140579 16143708 ECH
Cca11g02136 11 47195078 47199397 Cca03g00755 03 16140579 16143708 PCT