Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02076 ATGCTTCAAGTAGAGCAAATTAATCAACTAAGGGAGATATTCGGTCGATTCGACATGGACTCAGATGGGAGCCTAACCATGTTGGAGCTAGCAGCACTTCTGAGGTCACTGGGCCTGAAGCCCTCGGGTGAGCAAGTCCAGGCCCTCTTAGCCAACATGGACTCAAATGGAAATGGAAAAGTTGAGTTTGATGAGTTGGCGAGGGCCATATTACCCGACATAAATGCACAGGTGTTGGTGAACCAAGAAGAGCTTCTAAGGGTGTTCAAGTGCTTTGATCGTGATGGGAATGGTTTTATATCTGCTGCAGAGTTGGCTGGGGCCATGGCCAAAATGGGTCAGCCTCTTACGTATCGAGAGCTCACGGAGATGATCAAAGAGGCTGACACAGATGGTGATGGTGTCATTAGCTTCAATGAGTTTGCCACCATCATGGCTCGCTCTGCTTCTCATTTCTTAGGCCTCGCATAA 471 0.4841 MLQVEQINQLREIFGRFDMDSDGSLTMLELAALLRSLGLKPSGEQVQALLANMDSNGNGKVEFDELARAILPDINAQVLVNQEELLRVFKCFDRDGNGFISAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFNEFATIMARSASHFLGLA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02076 156 Gene3D - 76 154 - -
Cca11g02076 156 SUPERFAMILY EF-hand 3 147 IPR011992 -
Cca11g02076 156 Gene3D - 1 75 - -
Cca11g02076 156 CDD EFh 84 146 IPR002048 GO:0005509
Cca11g02076 156 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Cca11g02076 156 Pfam EF-hand domain pair 8 69 IPR002048 GO:0005509
Cca11g02076 156 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Cca11g02076 156 CDD EFh 9 70 IPR002048 GO:0005509
Cca11g02076 156 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Cca11g02076 156 PANTHER CALCIUM BINDING PROTEIN 2 155 - -
Cca11g02076 156 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Cca11g02076 156 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Cca11g02076 156 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Cca11g02076 156 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Cca11g02076 156 ProSitePatterns EF-hand calcium-binding domain. 18 30 IPR018247 -
Cca11g02076 156 ProSiteProfiles EF-hand calcium-binding domain profile. 116 151 IPR002048 GO:0005509
Cca11g02076 156 SMART efh_1 120 148 IPR002048 GO:0005509
Cca11g02076 156 SMART efh_1 84 112 IPR002048 GO:0005509
Cca11g02076 156 SMART efh_1 9 37 IPR002048 GO:0005509
Cca11g02076 156 SMART efh_1 45 73 IPR002048 GO:0005509
Cca11g02076 156 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02076 Cca-Chr11 46334190 46334954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02076 5 155 EF-hand Containing Proteins AT1G18530 77.483 8.82e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02076 K13448 - gmx:100795885 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00716 03 13888670 13889704 Cca11g02076 11 46334190 46334954 ECH
Cca11g02076 11 46334190 46334954 Cca11g02076 11 46334190 46334954 ECH