Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00716 ATGCATTGCATGTCTCTCTTGCATTGTTGTTTCGTGGATTACATCGAGAACAAAATGTCGAAGCTCCAAGTCGACCAGCTCCATCAATTGAAGGAAACCTTCACGAGGTTCGACATGGATTCAGATGGAAGCCTAACAAGTTTGGAGCTCGAGGCGCTTCTTAGGTCACTGGGGCTAAAACTCTCGGGTGACATTCACGCGTTATTAGCCAACATGGATTCGAACGGAAACGGCTTCGTAGAGTTCGATGAGTTGGTGGATGCAATATTGCATGACATAAGCGCAGAGATTTTGTTGAACCAAGAAATGCTACGTGGGGTGTTCAAATGTTTCGATCGTGATGGCAATGGCTATATAACTAGGGCTGAATTGGCGGGAACAATGGCCAAAATGGGCCAACCCCTTACGTATAGAGAACTCACGGAGATGATCACAGAGGCTGATACGGATGGTGATGGTGTCATTAGCTTCAATGAGTTTGCCACTGTTATGGGTAGGTCAGCCTCTGATTTCTTAGGGCTTGCCTTCTCGTAG 534 0.4663 MHCMSLLHCCFVDYIENKMSKLQVDQLHQLKETFTRFDMDSDGSLTSLELEALLRSLGLKLSGDIHALLANMDSNGNGFVEFDELVDAILHDISAEILLNQEMLRGVFKCFDRDGNGYITRAELAGTMAKMGQPLTYRELTEMITEADTDGDGVISFNEFATVMGRSASDFLGLAFS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00716 177 ProSitePatterns EF-hand calcium-binding domain. 148 160 IPR018247 -
Cca03g00716 177 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 21 175 - -
Cca03g00716 177 ProSitePatterns EF-hand calcium-binding domain. 38 50 IPR018247 -
Cca03g00716 177 ProSiteProfiles EF-hand calcium-binding domain profile. 25 60 IPR002048 GO:0005509
Cca03g00716 177 CDD EFh 29 89 IPR002048 GO:0005509
Cca03g00716 177 PANTHER CALCIUM BINDING PROTEIN 21 175 - -
Cca03g00716 177 ProSitePatterns EF-hand calcium-binding domain. 112 124 IPR018247 -
Cca03g00716 177 ProSiteProfiles EF-hand calcium-binding domain profile. 64 95 IPR002048 GO:0005509
Cca03g00716 177 SMART efh_1 64 92 IPR002048 GO:0005509
Cca03g00716 177 SMART efh_1 103 131 IPR002048 GO:0005509
Cca03g00716 177 SMART efh_1 29 57 IPR002048 GO:0005509
Cca03g00716 177 SMART efh_1 139 167 IPR002048 GO:0005509
Cca03g00716 177 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Cca03g00716 177 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Cca03g00716 177 ProSiteProfiles EF-hand calcium-binding domain profile. 99 134 IPR002048 GO:0005509
Cca03g00716 177 Pfam EF-hand domain pair 102 164 IPR002048 GO:0005509
Cca03g00716 177 Pfam EF-hand domain pair 29 88 IPR002048 GO:0005509
Cca03g00716 177 SUPERFAMILY EF-hand 17 165 IPR011992 -
Cca03g00716 177 CDD EFh 103 164 IPR002048 GO:0005509
Cca03g00716 177 Gene3D - 4 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00716 Cca-Chr3 13888670 13889704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00716 25 174 EF-hand Containing Proteins AT1G18530 72.848 4.48e-76 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00716 K13448 - gmx:100813924 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00716 03 13888670 13889704 Cca11g02076 11 46334190 46334954 ECH
Cca03g00716 03 13888670 13889704 Cca03g00716 03 13888670 13889704 ECH