Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02059 ATGTCACGCACTCGCATTGCTGCTATTCACCGCTTACGCTACAGCTTCACCTACACCGCATCATTATCTGCAACTACTCTCTCTCGCTCTCAATTCCAATGTCATGGTTATTCTTCTTCCGCCCCCAATCAAGGCCTAGTCGGTGGCGGCCACGAGCATTACCCCACTGGAGACTTTGATTTCAACCCTATCACAGGATGGAAAAAAAGTATCGTCAAGCTCAAGATGCTAACAGCCTGGCCCTGGGAGCGTCTCCGATACGGCACCGTCTTCACTGTCAAGTTGCGCGGCCAGATTTCGGATCAGCTCAAGACTAGATTCTCTCCGGGATTATCTCTGCCTCAAATTTGTGATAATTTCTTGAAGGCGGCTTATGATCCTCGAATTTCCGCCATCTATCTTCACATTGATATTTTAAACTGCGGTTGGGCCAAGGTCGAAGAAATTCGAAGGCACATCTTGAATTTCAGAAAATCAGAGATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTTGGATTGACTGTTCAAGCCCAATTCGTCAGAGGTGTTTTGGAGAATATTGGAATTGAACCACAATTGGAAAGGATTGGCAAATACAAAAGTGTAGGAGATCAACTAACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTGACTTCATTGCTTGATAACATCTATACAAATTGGTTGGACAAAGTCTCTTCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAATTTCATAAATGAAGGTGTTTATCAAGTAGAGAGGCTTAAAGAAGATGGCTTCATATCAGACATAATGTATGACGATGAGGTTATCACTAGGTTGAAGGAGAGACTTCAAGTGAAAACAAATAAAAATCTGCCTATGGTTAATTACAGAAAATACTCTGGAGTCAGGAAATCAACTCTTGGACTATCAGGTGGTAAAGATTTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGTCGTATCGAGAGTCCATTAAGTTCCCGTAGCTCAGGTATCATTGGAGAGAAGTTCATTGAGAAGATACGCAGGGTTAGAGAGTCAAATAAATATAAGGCAGCTATTATCCGAATTGACAGTCCAGGAGGTGATGCTCTTGCTTCCGATTTGATGTGGAGAGAAATCAGGCTTTTGGCTGCCTCAAAACCCGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGGGCAGGAGCTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATTATATCGAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAGCGTTCTTTTAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGTGCAACATGCTTATAAACAATTTCGAGACAAGGCTGCCGTTTCTCGATCAATGAGT 1476 0.4282 MSRTRIAAIHRLRYSFTYTASLSATTLSRSQFQCHGYSSSAPNQGLVGGGHEHYPTGDFDFNPITGWKKSIVKLKMLTAWPWERLRYGTVFTVKLRGQISDQLKTRFSPGLSLPQICDNFLKAAYDPRISAIYLHIDILNCGWAKVEEIRRHILNFRKSEIYAPPSAYFSLFGLTVQAQFVRGVLENIGIEPQLERIGKYKSVGDQLTRRTMSEDHHEMLTSLLDNIYTNWLDKVSSARGKKREDIENFINEGVYQVERLKEDGFISDIMYDDEVITRLKERLQVKTNKNLPMVNYRKYSGVRKSTLGLSGGKDLIAIIRASGSIRRIESPLSSRSSGIIGEKFIEKIRRVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELRAAEQRSFRPDEAELFSKSVQHAYKQFRDKAAVSRSMS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02059 492 CDD S49_SppA_67K_type 92 281 - -
Cca11g02059 492 Pfam Peptidase family S49 384 491 IPR002142 GO:0006508|GO:0008233
Cca11g02059 492 Pfam Peptidase family S49 159 285 IPR002142 GO:0006508|GO:0008233
Cca11g02059 492 Gene3D - 173 240 - -
Cca11g02059 492 PANTHER PROTEASE 4 10 492 - -
Cca11g02059 492 Gene3D - 311 461 - -
Cca11g02059 492 Gene3D - 86 172 - -
Cca11g02059 492 SUPERFAMILY ClpP/crotonase 76 271 IPR029045 -
Cca11g02059 492 CDD S49_Sppa_N_C 316 492 IPR002142 GO:0006508|GO:0008233
Cca11g02059 492 SUPERFAMILY ClpP/crotonase 316 491 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02059 Cca-Chr11 46170035 46183012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02059 K04773 - gmx:100809623 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02059 11 46170035 46183012 Cca11g02059 11 46170035 46183012 ECH
Cca11g02059 11 46170035 46183012 Cca03g00701 03 13133601 13144880 PCT