Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00701 ATGTCGAAGCTCCTTCTACACTCTTCTCCCCTCACTACCTCCATTCACCGCTGCAACGCTTTATCTTCCGCTTTTTCCCTTCAATTCCAATGCCGATtctcctcttctcttctctctcgtccccaccctctccgctccCACGCGCGAAGAGGAGGCCTTTCCCCGCGCGCATTCGATTCGTCTTCCGACGCCAAGAGCGCAGAAGAAGCAGAGGATAAAGAAGGTGCCGTTGAGAATCGGAGTGTTATGATCGCCGATGAGGATTATCCCAGTGGCGAGTTCGATTTTGAGCCGATTACCGGATGGAGAAGCTTCCTCGTGAAGCTTAAGATGCTGCTCGCGTTCCCTTGGGAGCGTGTTCGCAAGGGAAGCGTCCTCACGATGAAGCTTCGCGGCCAGATATCTGATCAAGTGAAGAGTAGGTTCTCTTCAGGACTTTCTCTGCCTCAAATTTGTGAGAACTTTTTGAAAGCAGCATACGATCCTCGTATTTCTGGGATTTATCTTCATATTGATAGTTTAAATTGCGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCACATATTGGATTTCAGAAAATCAGGAAAATTTGTTCTGGCTTATGTCCCATTATGTCAAGAAAAGGAATATTACCTTGCGTGTGCATGTGAAGAGATATACGCCCCACCCAGTGCATACTTTTCTCTGTTTGGATTGACTGTTCAAGCCTCATTCCTCAGAGGTATTTTAGATAACATTGGAATTGAACCACAAGTGGAAAGGATTGGAAAATACAAAAGTGCAGGAGATCAACTAGCTCGAAGATCCATGTCTGAAGAAAATTGTGAGATGCTGACTGCATTGCTTGACAACATCTATACAAATTGGCTAGATAAAGTCTCTTCTGCCAAAGGTACATTTGCATTTGATGTTTTTGTTGAATCTTTAACCAATATATTAACTTGTGGGTTTCTGAACTTTAATACAGGAAAAAGAAGAGAAGATATTGAGAAATTCATAAATGAAGGTGTTTATCAAGTAGACAAGCTGAAAGAAGAGGGACTCATATCAAATATAATCTATGATGATGAAATTATTGCCATGTTGAAGGAGAAACTTGGAGTGAAATCAGATAAAGATCTGCCAATGGTGGATTACAGGAAATACTCCCGAGTTAGGAAATGGACTGTTGGAATACCAGGTGGAAAAGAACTTATAGCCATTATCCGAGCATCCGGGAGTATTAGTCGTGTAGAGAGTCAATTAAGTGTCTCTAGCTCAGGCATAATTGCAGAGAAGTTCATTGAGAAGATTCGCACTGTCAGAGAGTCAAAAAAATTTAAGGCTGCCGTCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCCGGCTTTTGGCCGCTTCAAAACCAGTTGTTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGCTACTATATGGCAATGGGAGCTGATGCTATTGTCGCTGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGGGAAACTGTACGAAAAGATAGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCAGAGCTTCTTGCTGCTGAACAACGTCCTTTCAGGCAATATATTTTCTTCATTTCCTTGCCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAATTTCGAGACAAGGCAGCTTTGTCCAGATCAATGGCTGTAGAAAAGATGGAGGAAGTTGCACAGGGAAGGGTTTGGACCGGTTACGATGCAGCTTCACATGGTTTAGTTGATGCTATTGGTGGCCTTTCTCGAGCTATTGCCATAGCAAAAATGAAGGCTAATATACCTCAAGACGATCAGGTTACTCTTGTGGAGATCACAAGACCTAGCCCTTCTCTACCCGAGATTTTATTAGGCGTAGGGAATTCCCTCGTTGGAGCTGACAGAACCATTAAGGAACTGCTACAGGGATTAGCATTTTCTGAAGGAGTTCAAGCTCGGATGGATGGAATCATGTTTCAGACATTGGAAGATTTCGAGGTTGTCTGA 2082 0.4188 MSKLLLHSSPLTTSIHRCNALSSAFSLQFQCRFSSSLLSRPHPLRSHARRGGLSPRAFDSSSDAKSAEEAEDKEGAVENRSVMIADEDYPSGEFDFEPITGWRSFLVKLKMLLAFPWERVRKGSVLTMKLRGQISDQVKSRFSSGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGWGKVEEIRRHILDFRKSGKFVLAYVPLCQEKEYYLACACEEIYAPPSAYFSLFGLTVQASFLRGILDNIGIEPQVERIGKYKSAGDQLARRSMSEENCEMLTALLDNIYTNWLDKVSSAKGTFAFDVFVESLTNILTCGFLNFNTGKRREDIEKFINEGVYQVDKLKEEGLISNIIYDDEIIAMLKEKLGVKSDKDLPMVDYRKYSRVRKWTVGIPGGKELIAIIRASGSISRVESQLSVSSSGIIAEKFIEKIRTVRESKKFKAAVIRIDSPGGDALASDLMWREIRLLAASKPVVASMSDVAASGGYYMAMGADAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRQYIFFISLPDEAELFAKSAQHAYKQFRDKAALSRSMAVEKMEEVAQGRVWTGYDAASHGLVDAIGGLSRAIAIAKMKANIPQDDQVTLVEITRPSPSLPEILLGVGNSLVGADRTIKELLQGLAFSEGVQARMDGIMFQTLEDFEVV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00701 693 Pfam Peptidase family S49 191 297 IPR002142 GO:0006508|GO:0008233
Cca03g00701 693 Pfam Peptidase family S49 467 625 IPR002142 GO:0006508|GO:0008233
Cca03g00701 693 PANTHER PROTEASE 4 69 685 - -
Cca03g00701 693 SUPERFAMILY ClpP/crotonase 112 298 IPR029045 -
Cca03g00701 693 CDD S49_SppA_67K_type 126 364 - -
Cca03g00701 693 MobiDBLite consensus disorder prediction 62 77 - -
Cca03g00701 693 Gene3D - 270 384 - -
Cca03g00701 693 Gene3D - 123 269 - -
Cca03g00701 693 MobiDBLite consensus disorder prediction 44 77 - -
Cca03g00701 693 SUPERFAMILY ClpP/crotonase 396 612 IPR029045 -
Cca03g00701 693 CDD S49_Sppa_N_C 399 621 IPR002142 GO:0006508|GO:0008233
Cca03g00701 693 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 399 621 IPR004635 GO:0006508|GO:0008233
Cca03g00701 693 Gene3D - 548 676 - -
Cca03g00701 693 Gene3D - 395 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00701 Cca-Chr3 13133601 13144880 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00701 K04773 - gmx:100781522 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00701 03 13133601 13144880 Cca03g00701 03 13133601 13144880 ECH
Cca11g02059 11 46170035 46183012 Cca03g00701 03 13133601 13144880 PCT