Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02046 ATGCGACGGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGGGCTGCCGAGTTTCGGCGGCCGGTACGACGGAGGCTTTCTTATTGGATCTGGCTTCTCCTGGCCTTCTCCTCTATCCTCGCTTTGCTTCTCTTCCTTCTCCAACACAATCACCATCACCAAGATCCCCTTCAATACCCTCTGCTGGAGAGTGATGCAAGAGTTGAACATTTTGCTAAGGAGGGTTTGAATTTTACTGAAGAGATTTTAAGCATAACATCATTTTCGCGGCAGTTAGCAGAGCAAATGATTCTGGCCAAGGCTTATGTGGTTATTGCCAAAGAACACAACAATCTTCACCTTGCTTGGCAGCTTAGCTCAAAGATCAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCTATGACTGGTGACCCCATCACATTGGAGGAAGCAGAGCCAATTATTAAAAGCCTTTCTTCTCTTATGTTTAAGGCGCAAGATATCCATTATGACATTGCAACCACAATAGTGACTATGAAATCGCACATTCAAGCTCTAGAAGAGCGTGCCAATGCAGCAATAGTTCAAAGCACTGTGTTTGGTCAAATAGCAGCTGAAGCAGTACCTAAGAGTCTTCATTGCCTAAATGTGAAACTCATGTCTGATTGGCTAAAGATGCCGTCCCTGCAAGAACTCTCAGATGAGAGAAAAAACTCCCAAAGGCTCGTGGACAACAATCTATATCATTTCTGCATATTTTCAGATAATGTCCTGGCAACATCTGTAGTTGTAAACTCAACTGTCTTCAATGCTGATCATCCAAAGCAGTTGGTCTTTCACATTGTCACTAATGGAGTGAATTATGGGGCAATGCAAACATGGTTCCTAAGGAATGACTTTAAAGGAGCCACCATAGAGGTACAGAACATTGAGGAGTTTCATTGGTTGAATGCATCTTATTCTCCTCTTGTCAAGCAGCTTCTCAATCCTGACTCACGAACCTTCTATTTTGGAGCATATCAAGATTTAAATGTTGAACCCAAAATGCGGAATCCTAAGTATTTGTCTCTGTTGAATCATCTTCGGTTTTATATTCCTGAGATTTATCCACAACTTGAGAAGGTTGTCTTCCTGGATGATGACCTTGTTGTCCAGAAAGATCTGACCCCTCTTTTCTCTCTGGATTTGCATGGGAATGTGAATGGTGCAGTTGAAACTTGTCTTGAAGCATTTCATCGTTACTACAAGTATCTCAATTTCTCAAACTCAATTATTAGCTCGAGGTTTGATCCGCAGGCATGTGCATGGGCATTTGGTATGAACATTTTTGACTTGGTTGCATGGAGGAAGGCAAATGTGACCACAAGATATCACTATTGGCAAGAGCAAAATGCTGATGGGACTCTGTGGAAGCTGGGGACACTTCCTCCTGCTCTTCTATGTTTTTATGGTTTGACAGAGCCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTACGACCTAAATATTGACAACCGCCTCATTGAAAGTGCTGCAGTAATTCACTTCAATGGGAACATGAAGCCATGGTTGAAGTTAGCTATAGGCAGGTATAAGCCACTATGGGACAAGTACATAAATCAAAGTCACCCTCATCTTCAAGATTGTGTCACAAGTTGA 1728 0.4005 MRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAAEFRRPVRRRLSYWIWLLLAFSSILALLLFLLQHNHHHQDPLQYPLLESDARVEHFAKEGLNFTEEILSITSFSRQLAEQMILAKAYVVIAKEHNNLHLAWQLSSKIRSCQLLLSKAAMTGDPITLEEAEPIIKSLSSLMFKAQDIHYDIATTIVTMKSHIQALEERANAAIVQSTVFGQIAAEAVPKSLHCLNVKLMSDWLKMPSLQELSDERKNSQRLVDNNLYHFCIFSDNVLATSVVVNSTVFNADHPKQLVFHIVTNGVNYGAMQTWFLRNDFKGATIEVQNIEEFHWLNASYSPLVKQLLNPDSRTFYFGAYQDLNVEPKMRNPKYLSLLNHLRFYIPEIYPQLEKVVFLDDDLVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSRFDPQACAWAFGMNIFDLVAWRKANVTTRYHYWQEQNADGTLWKLGTLPPALLCFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWDKYINQSHPHLQDCVTS 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02046 575 CDD GT8_like_1 270 563 - -
Cca11g02046 575 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 272 572 IPR029044 -
Cca11g02046 575 Coils Coil 42 42 - -
Cca11g02046 575 Pfam Glycosyl transferase family 8 274 549 IPR002495 GO:0016757
Cca11g02046 575 SUPERFAMILY Nucleotide-diphospho-sugar transferases 270 573 IPR029044 -
Cca11g02046 575 PANTHER HEXOSYLTRANSFERASE 43 575 - -
Cca11g02046 575 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 43 575 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02046 Cca-Chr11 46022020 46024816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02046 42 572 Glycosyltransferase AT2G20810 55.514 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02046 K13648 - gmx:100798878 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02046 11 46022020 46024816 Cca11g02046 11 46022020 46024816 ECH
Cca11g02046 11 46022020 46024816 Cca03g00687 03 12621757 12625857 PCT