Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02032 ATGCGGTGGGAAAAGCTTGAGGTGAAGGCGATAGGCACAGAGGGTGGAGGAGAGGTGTATGGGCCAGGGAAGCGGTGGGGACACACCTGCAACGCCGTCAAAGGTGGCAGACTCGTCTATGTCTTTGGCGGTTACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTCGACACTGTGAAGCAGACATGGAGCCAACCCGCTGTAAAAGGCTCCCCACCTACACCAAGGGACAGCCATACTTGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGCACAGATGGAATGAATCCTCTGAAGGATTTGCATATATTAGACACTTCTTCACATACATGGATTTGTCCAACCATAAGAGGAGAAGGGCCTCAGGCACGAGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGGCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAATAATAATGAGGTCTACTACAATGATCTTTACATATTAAATACAGAGACATTTGTTTGGAAGTGTGCTACAACATCAGGCTCTCCACCATCTCCTCGTGATAGCCATACTTGTTCATCTTGGAAAAGTAAAATTATTGTGATAGGCGGTGAAGATGGGCATGATTATTATTTGTCTGATGTCCATATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAATTATTGCCACCCCGGGCTGGTCACTCCACTATTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCGCAAAATCTATATAATGACCTTTATATGCTCGATATTGATACCGGTGTTTGGACAAATGTTACAACTGCAACCAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGATCCTTTTAAGGGTGGTGTTCTTGTATTCATTGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCTCGGGAAAGTGAGCAGAGGCCAGAGAAGTTATCTTTAAGGAAGCAATTGAAACTGAAATGCCAAGAACAAAATCTTAATCCTAGCCAAAATCAAGTTCTAGTTAGATATGGAGTGGGTTCTGATATGGGCCAGATCATGACAGTATTGAATTATAGCCAGCCAAGTAGACCAAATATCCCAGTAAACCAGTCCCTACCTTCTGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAAAACATTTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATTCTGTTTGTAAACAAGCCAAACTCTCTGTACTCAGCTGCTCATACTTCCAGTAGGAAAAGGACTGCTGGTGAAATTGATAATGTTGTCTCAAATGGTATGCATCCTAACCAATTAAGGACTCCGAAAGTGCTCAAGCAGAATCAAATGGAAAATAGGGAAGCATTTCGTGGAGACAGTTCTGAATCTCATGAACACCGCACTGAATCTGTTGCTGTGCTTATGGCAACTGACCCAACGACTGCCAATGTTTCTGATATCCATAAGGTTTCTGCCAACCCTGAACCAGAAGCTGCTGCTCTGAATCGAAATGATGAAAAACATGAAACACCCCAATCCTTAAGCGGAAACTTAATAAATGACGCGACAAGTTCCAAAGCTGAGGTGCAAACAAATATGCTAATTTCCAATTTTGAAGTTCCAAGACATGATATAAAAAGTGATGCCCCAAACTACAACACTGAATTTCCGAAACCTTCTGCAGCTGAGAGTGCTACGTGTCTATCAAATCAAGGTGCAGTGGCGGATTCCACAACTCCAACGACAAGAGAATGCGGTGGACCAGCAAAAATAATTTGA 1848 0.428 MRWEKLEVKAIGTEGGGEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPAVKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSSHTWICPTIRGEGPQAREGHSAAVVGKRLFIFGGCGKSADNNNEVYYNDLYILNTETFVWKCATTSGSPPSPRDSHTCSSWKSKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTISFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTATNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNLNPSQNQVLVRYGVGSDMGQIMTVLNYSQPSRPNIPVNQSLPSGKKMFEAKVTENISEGYTIETVIDGKPLRGILFVNKPNSLYSAAHTSSRKRTAGEIDNVVSNGMHPNQLRTPKVLKQNQMENREAFRGDSSESHEHRTESVAVLMATDPTTANVSDIHKVSANPEPEAAALNRNDEKHETPQSLSGNLINDATSSKAEVQTNMLISNFEVPRHDIKSDAPNYNTEFPKPSAAESATCLSNQGAVADSTTPTTRECGGPAKII 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02032 615 Pfam Galactose oxidase, central domain 37 86 - -
Cca11g02032 615 Pfam Kelch motif 125 169 - -
Cca11g02032 615 Pfam Galactose oxidase, central domain 183 228 - -
Cca11g02032 615 Pfam Galactose oxidase, central domain 234 283 - -
Cca11g02032 615 SUPERFAMILY Kelch motif 73 322 IPR015915 GO:0005515
Cca11g02032 615 MobiDBLite consensus disorder prediction 596 615 - -
Cca11g02032 615 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 556 - -
Cca11g02032 615 PANTHER KELCH REPEAT DOMAIN 1 556 - -
Cca11g02032 615 Gene3D - 1 150 IPR015915 GO:0005515
Cca11g02032 615 SMART kelc_smart 38 88 IPR006652 GO:0005515
Cca11g02032 615 SMART kelc_smart 246 292 IPR006652 GO:0005515
Cca11g02032 615 SMART kelc_smart 195 245 IPR006652 GO:0005515
Cca11g02032 615 SMART kelc_smart 89 138 IPR006652 GO:0005515
Cca11g02032 615 Gene3D - 151 398 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02032 Cca-Chr11 45777961 45785924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02032 52 311 Acyl Lipid Metabolism Gene Families AT3G05420 28.571 5.70e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02032 - - gmx:100820222 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02032 11 45777961 45785924 Cca11g02032 11 45777961 45785924 ECH
Cca11g02032 11 45777961 45785924 Cca03g00672 03 12266924 12273510 PCT