Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00672 atgaggtgggaaaaggtgaagggaataggagaaggaccagggaagaggTGGGGCCACACGTGTAACGCCGTTAAAGGTGGCAGGCTTCTTTATATCTTCGGCGGTTACGGCAAACTTAACTGCCAGACCAACCAAGTTCATGTCTTGGACACTTTGAGGCAGAGTTGGGGTGAACCAGAAATTAATGGACCTCCACCTACCCCTAGGGACAGCCATAGTTGCACTGTTGTTGGTGATAATCTGTTTGTGTTTGGAGGTACAGATGGGACCAATCTGCTGAAGGATTTGTGCATACTAGACACTTCTTCACATACATGGATTTGTCCAACTGTGAGAGGAGAAGCACCAGAGGCACGTGAGGGTCATGCTGCAGCACTTGTTGGCAAAAGACTGTTTGTGTTTGGTGGTTGTGGGAGATCTGCTGATAACATTAATGAGGTGTACTACAATGACCTTTACATATTGAATACAGAGACGTTTGTTTGGAATCGTGCTACAACATCAGGCACTTCACCATCTCCTCGTGATAGCCATTCTTGCTCGTCTTGGAAAAACAAAATTATTGTGATAGGTGGTGAAGATGAACGTGACTATTATCTGTCTGATGTCCATATCCTAGATACTGATACTCTAATTTGGAGAGAACTGTCTACGTCAGGCCAATCATTGCCACCTCGAGCCGGTCATTCTACGGTTTCTTTTGGCAAGAACTTGTTTGTCTTTGGGGGCTTTACAGATGCTCAAAGCCTATACAATGACCTGTATATGCTTGACATTGAGACTGGTGTGTGGACGAAGGTGATGACTGCTCCTAATGGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGCTTAGACCCATGTATGAGTGGTGTTCTTGTGTTTATTGGTGGATGCAGTAGAAGTCTGGAGGGCATAGATGATATGTATTACCTATACACAGGGATTGCACGGGAAAATGAACGGAGACCAGATAAGTTATCCTTGAGGAAGCAATTGAAGCTGAAATGTCTTGAACAGAATCTCAATCTTGTCCCAAACCCAGTTCTGTGTGGATATGGAGTGGGTGCTGATAGCAACCAGCCCATGGCAATCTTGAACTATAATAGCCCACTAAGTAGACTAAATAGTCCAGTATGTCAATCCTTGCCTCCTGGAAAGAAAATCTTTCAAGCCAATGTTACGGAAAGAAACTCAGCAGGATATCGTATTGAAACCGTCATTGATGGAAAGCCTCTTCATGGAATTCTGTTTTTAAACAAGCCACACACTCTTAATCCAGTTACTAATACTTCCAGTAGGAAAAGGGCTTCTGCTGATATTGGGAGTGTTGTTTCAAATGGTATAAATTCAAACAATTTGACAACTTCTAAAGTGCTCAAGCAGGAGACAATTGAAGATAGACAGGAATTACAGGGAGGAGACAGTTCAGAATCTCGTGAACGCCACAAGGAAGCTGATACCACTGTCATATCAAGTACCCCGACAACTGCTGCTGAGTCCTTTAAGGTTTCCGTCAACCAAGAACCACAAGCTGTTTCTTCGAATCGAAATGAAGAAGAAAATGTGACAACGAAATCCTTAGTTGAGAACTTGAAAACCGATGCACCCAATGATGTGGCAAGTTCCAAAGGTGTAACAGGGGATTGCTCAACTCCAAGGACAGAATGCACAGTGAACCGGCAAAATTAA 1692 0.4226 MRWEKVKGIGEGPGKRWGHTCNAVKGGRLLYIFGGYGKLNCQTNQVHVLDTLRQSWGEPEINGPPPTPRDSHSCTVVGDNLFVFGGTDGTNLLKDLCILDTSSHTWICPTVRGEAPEAREGHAAALVGKRLFVFGGCGRSADNINEVYYNDLYILNTETFVWNRATTSGTSPSPRDSHSCSSWKNKIIVIGGEDERDYYLSDVHILDTDTLIWRELSTSGQSLPPRAGHSTVSFGKNLFVFGGFTDAQSLYNDLYMLDIETGVWTKVMTAPNGPSARFSVAGDCLDPCMSGVLVFIGGCSRSLEGIDDMYYLYTGIARENERRPDKLSLRKQLKLKCLEQNLNLVPNPVLCGYGVGADSNQPMAILNYNSPLSRLNSPVCQSLPPGKKIFQANVTERNSAGYRIETVIDGKPLHGILFLNKPHTLNPVTNTSSRKRASADIGSVVSNGINSNNLTTSKVLKQETIEDRQELQGGDSSESRERHKEADTTVISSTPTTAAESFKVSVNQEPQAVSSNRNEEENVTTKSLVENLKTDAPNDVASSKGVTGDCSTPRTECTVNRQN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00672 563 SUPERFAMILY Kelch motif 3 163 IPR015915 GO:0005515
Cca03g00672 563 Pfam Kelch motif 116 160 - -
Cca03g00672 563 Gene3D - 1 110 IPR015915 GO:0005515
Cca03g00672 563 Gene3D - 111 318 IPR015915 GO:0005515
Cca03g00672 563 MobiDBLite consensus disorder prediction 461 488 - -
Cca03g00672 563 PANTHER KELCH REPEAT DOMAIN 11 438 - -
Cca03g00672 563 SUPERFAMILY Kelch motif 113 303 IPR015915 GO:0005515
Cca03g00672 563 MobiDBLite consensus disorder prediction 460 563 - -
Cca03g00672 563 MobiDBLite consensus disorder prediction 489 563 - -
Cca03g00672 563 Pfam Galactose oxidase, central domain 68 113 - -
Cca03g00672 563 Pfam Galactose oxidase, central domain 174 219 - -
Cca03g00672 563 Pfam Galactose oxidase, central domain 225 275 - -
Cca03g00672 563 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 11 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00672 Cca-Chr3 12266924 12273510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00672 2 298 Acyl Lipid Metabolism Gene Families AT3G05420 27.796 3.68e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00672 - - gmx:100785267 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00672 03 12266924 12273510 Cca03g00672 03 12266924 12273510 ECH
Cca11g02032 11 45777961 45785924 Cca03g00672 03 12266924 12273510 PCT