Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01975 ATGTTGGTGAAAGGTTTGGTTCGTGCAAGTGCAAGCGGCAAAAGGGTTGTTCAAGAGCACCTGTTGTCGCTATTGCAGAACTGCAACAGCGTAAACAACCTCATTCAAATTCACACCCAAGTACTTCTCAACGGCCTCTCTCACAAGAACATCATCATCGCCAAGCTTCTCAACTTCTACATAGCCTCTGGCCATCTCCAACATGCCCACTACCTTTTCGACAAAATGTCTAACCCAACAACCACTGTTTGGAACCACGTCATCAGAGGCTATGCCGGCACCCACACGCCTTGGAAGTCGCTGGAATATTACAACCACATGGTGTCTGCCATGGCTCAGCCTGATGGGTTCACCTACTCGTCTCTCCTGAGTGCTTGTGCGCGAGGTGGGTTGGTGAAAGAAGGGGAACAGGTGCATGCCATGGTTTTGGTAAAAGGGTATTGCTCTAATGTCTTTGTGGACACCAATTTGATCAATTTCTACGCGAGGGATGGTGGTGTTGCGCGAGCGCGCCATGTGTTTGATGATATGACAAAGAGAAGTGTTGTTAGCTGGAATTCTTTACTTGCTGGCTATGTTAGGTGTGGAGATTTTGATGGGGCCAGAAGGGTTTTTGAGGTGATGCCGGAAAGGAATGTTGTGTCTTGGACTACCATGGTTGCCGGGTGTGCTCGGAGTGGGAAGTCTAGGCAAGCTTTGTTGTTGTTTGGTGAGATGAGGAGAGCGCATGTGGAATTGGATCAGGTGGCATTGGTGGCGGCTTTGTCGGCGTGTGCTGAATTGGGGGATCTGAAGTTGGGAAGATGGATCCATTGGTATGCTCAACAGGGGTTTGTTGCGAGGAACCAACAGCAACCCTCTGTGCGCCTCAACAATGCACTCATACACATGTATGCTAGTTGTGGAGTCATTCATGAAGCTTATCAAGTGTTTGCCAAGATGCCGCAGAAAAGCAACGTGACTTGGAATAGCATGATCATGGCTTTTGCGAAACATGGACTTGGGAAGGAAGCCCTTGATCTGTTTAAGACCATGCTTACTGACGGTGTAGGAGTGAATGGAGTAAGGCCTGATGAAACAACCTTCATTGTAGTTCTTTGGGCTTGCAGCCATGCAGGGTTTGTAGATGAAGGACGGAAAGTTTTTGCATCCATGAAGTATACTTGGGGAATCAGCCCGAGGATTGAACACTACGGATGCATGGTTGATCTCTTGAGTCGTTCCGGATTCTTAGATGAAGCACGTGGGCTTATTGAAACTATGCCCTTAAAGCCTAATGATGCGCTATGGGGTGCTCTTATTGGTGGTTGCCGAATTCACAAGAATTCAGGGCTAGCATCACAAGTGGAAAACAAGTTAGTACCTGAGCTCAACGCTGATCAAGCTGCGGGCTATCTTGTGCTCTTGTCAAACATATATGCTTTTGGTGAAAGGTGGCGGGATGTCATTACAGTGAGACAGAAAATGATTGGGATGGGTGTGAAAAAGCCTCCAGGCAGAAGTTGGATCCAAATTTATGGAGCCGTCCATAATTTTGTGGCGGGTGACATGACTCATAAGCATTCATCTTTTATCTATGAAATCCTACGTGACATCACCAAGCAAGCCAATCTGGAGGCCTATGAACCGGAGATAAATATTTTCCTTGATGTTGAGGTGTAG 1662 0.4729 MLVKGLVRASASGKRVVQEHLLSLLQNCNSVNNLIQIHTQVLLNGLSHKNIIIAKLLNFYIASGHLQHAHYLFDKMSNPTTTVWNHVIRGYAGTHTPWKSLEYYNHMVSAMAQPDGFTYSSLLSACARGGLVKEGEQVHAMVLVKGYCSNVFVDTNLINFYARDGGVARARHVFDDMTKRSVVSWNSLLAGYVRCGDFDGARRVFEVMPERNVVSWTTMVAGCARSGKSRQALLLFGEMRRAHVELDQVALVAALSACAELGDLKLGRWIHWYAQQGFVARNQQQPSVRLNNALIHMYASCGVIHEAYQVFAKMPQKSNVTWNSMIMAFAKHGLGKEALDLFKTMLTDGVGVNGVRPDETTFIVVLWACSHAGFVDEGRKVFASMKYTWGISPRIEHYGCMVDLLSRSGFLDEARGLIETMPLKPNDALWGALIGGCRIHKNSGLASQVENKLVPELNADQAAGYLVLLSNIYAFGERWRDVITVRQKMIGMGVKKPPGRSWIQIYGAVHNFVAGDMTHKHSSFIYEILRDITKQANLEAYEPEINIFLDVEV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01975 553 Gene3D Tetratricopeptide repeat domain 161 281 IPR011990 GO:0005515
Cca11g01975 553 Pfam E+ motif 509 534 IPR046849 -
Cca11g01975 553 Pfam PPR repeat 292 317 IPR002885 -
Cca11g01975 553 Pfam PPR repeat 397 421 IPR002885 -
Cca11g01975 553 Pfam PPR repeat 183 213 IPR002885 -
Cca11g01975 553 Pfam PPR repeat 155 181 IPR002885 -
Cca11g01975 553 Pfam PPR repeat 320 350 IPR002885 -
Cca11g01975 553 Pfam PPR repeat 361 386 IPR002885 -
Cca11g01975 553 Pfam PPR repeat 117 143 IPR002885 -
Cca11g01975 553 Pfam PPR repeat 214 242 IPR002885 -
Cca11g01975 553 Gene3D Tetratricopeptide repeat domain 10 160 IPR011990 GO:0005515
Cca11g01975 553 Gene3D Tetratricopeptide repeat domain 352 521 IPR011990 GO:0005515
Cca11g01975 553 Gene3D Tetratricopeptide repeat domain 282 351 IPR011990 GO:0005515
Cca11g01975 553 Pfam E motif 440 504 IPR046848 -
Cca11g01975 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Cca11g01975 553 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Cca11g01975 553 TIGRFAM PPR: pentatricopeptide repeat domain 320 352 IPR002885 -
Cca11g01975 553 TIGRFAM PPR: pentatricopeptide repeat domain 183 214 IPR002885 -
Cca11g01975 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 530 - -
Cca11g01975 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Cca11g01975 553 PANTHER OS09G0411600 PROTEIN 10 530 - -
Cca11g01975 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01975 Cca-Chr11 45167843 45170374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01975 21 549 Glycoside Hydrolase AT3G49170 30.168 9.06e-79 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01975 - - gmx:100813379 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02182 07 49985477 49987447 Cca11g01975 11 45167843 45170374 ECH
Cca11g01975 11 45167843 45170374 Cca11g01975 11 45167843 45170374 ECH