Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02182 ATGATCAGAAAAAATAGAAGCACCAGCACCGTTAGCAATGTTAGAACCCTCAAACAAATTCGCGCTTTAATGATCGTTAACGGTTACAATTCGAACGTTGGTTTCCTCCGAAAACTCGTTCTCGCCGCCGCCATGTCAATGGTGGGTCCCGCCGCCACAACCGCCGTGACACAATACGCACTCCAAATGTTCGCTCAAATTCCCCAACCAGACACCTTCATGTGGAACACCATCATCAGAGGCTCATGTCAGAGCCCCGATCCCGTGCACGCGGTTGCACTGTACGCCCAGATGGACCAGCGTTCCGTGAAGCCTGATAACTTCACTTTCCCCTTTGTTCTCAAGGCTTGCACCAAGCTTTTATGGGTCAACACCGGTTCTACTGTTCATGGCCGCGTTTTGAGGCTTGGGTTCGGTTCAAATGTGGTTGTGAGTAACTCCCTTTTGGTTTTTCATGCTAAATGTGGAGACTTGAAGGTTGCAACTGAGATTTTTGATGATTCGGATAAGGGCGATGTGGTTGCTTGGTCTGCACTCATTGCGGGGTATGCCCAAAGAGGGGATTTGAGTGTTGCGCGGAAACTGTTTGATGAAATGCCGGAGAGAGATTTGGTTGCTTGGAATGTGATGATCACGGGGTACGCAAAGCACGGGGAGATAGAAAGTGCTAGGAGGCTTTTTGAAGAGGCTCCTGTGAGGGATGTTGTTAGTTGGAATACGGTGATCGGCGGTTATGTGCTTCGGGGGTTGAACCGGGAGGCATTGGGGTTGTTTGATGACATGTGTGGAGTTGGAGAGTGCCCTGATGAGGTGACAATGTTGAGCTTGTTGTCTGCTTGTGCTGATTTGGGGGATTTGGAGAGTGGTGAGAAGGTGCATGACAAGATCATGGAGATGAGCAAGGGGAAGTTGAGCACAGTGTTGGGGAATGCTCTTGTTGATATGTATGCCAAGTGTGGAAATATCAGTAAAGCAATTCATGTGTTTTGGTTGATAAGAGATAAAGATGTCATCTCGTGGAACTCGGTCATTTGGGGGTTGGCCTTTCATGGCCATGCTGAAGAGTCACTTGATCTGTTCAGGGAAATGCAGAGGACCAAGGTTTGTCCAGATGAGATCACTTTTATTGCTGTTTTGGCAGCCTGTAGTCATGCTGGGAATGTTGATGAGGGTAATCGTTATTTTCATCTTATGAGAAGTAAGTACAAGATTGAGCCAAACATTAGGCATTGTGGGTGTGTGGTGGACATGCTAGGGCGTGCTGGACTTTTAAAGGAAGCGTTTGATTTTATAGCTTCCATGAAGATTGAACCTAATGCGATTGTTTGGAGGAGTTTTCTTGGAGCTTGCAAAGTTCATGGAGATGTGGAGTTGGCAAAACGAGCAAATGAGCAGCTGCTTAGAATGAGAATTGACCACAGTGGTGACTATGTGTTGCTGTCAAACACATATGCTTCACAAGTTATTGAAGGACTTTGCTTGGAGCTTGCATAG 1494 0.4699 MIRKNRSTSTVSNVRTLKQIRALMIVNGYNSNVGFLRKLVLAAAMSMVGPAATTAVTQYALQMFAQIPQPDTFMWNTIIRGSCQSPDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLLWVNTGSTVHGRVLRLGFGSNVVVSNSLLVFHAKCGDLKVATEIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPERDLVAWNVMITGYAKHGEIESARRLFEEAPVRDVVSWNTVIGGYVLRGLNREALGLFDDMCGVGECPDEVTMLSLLSACADLGDLESGEKVHDKIMEMSKGKLSTVLGNALVDMYAKCGNISKAIHVFWLIRDKDVISWNSVIWGLAFHGHAEESLDLFREMQRTKVCPDEITFIAVLAACSHAGNVDEGNRYFHLMRSKYKIEPNIRHCGCVVDMLGRAGLLKEAFDFIASMKIEPNAIVWRSFLGACKVHGDVELAKRANEQLLRMRIDHSGDYVLLSNTYASQVIEGLCLELA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02182 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Cca07g02182 497 Gene3D Tetratricopeptide repeat domain 301 491 IPR011990 GO:0005515
Cca07g02182 497 Gene3D Tetratricopeptide repeat domain 203 300 IPR011990 GO:0005515
Cca07g02182 497 PANTHER OS03G0168550 PROTEIN 9 186 - -
Cca07g02182 497 PANTHER OS03G0168550 PROTEIN 217 487 - -
Cca07g02182 497 PANTHER OS03G0168550 PROTEIN 185 215 - -
Cca07g02182 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Cca07g02182 497 TIGRFAM PPR: pentatricopeptide repeat domain 205 233 IPR002885 -
Cca07g02182 497 TIGRFAM PPR: pentatricopeptide repeat domain 174 205 IPR002885 -
Cca07g02182 497 TIGRFAM PPR: pentatricopeptide repeat domain 338 372 IPR002885 -
Cca07g02182 497 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Cca07g02182 497 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Cca07g02182 497 TIGRFAM PPR: pentatricopeptide repeat domain 74 106 IPR002885 -
Cca07g02182 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cca07g02182 497 Gene3D Tetratricopeptide repeat domain 11 128 IPR011990 GO:0005515
Cca07g02182 497 Pfam PPR repeat 413 435 IPR002885 -
Cca07g02182 497 Pfam PPR repeat 205 229 IPR002885 -
Cca07g02182 497 Pfam PPR repeat 174 203 IPR002885 -
Cca07g02182 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Cca07g02182 497 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 186 - -
Cca07g02182 497 Pfam PPR repeat family 233 281 IPR002885 -
Cca07g02182 497 Pfam PPR repeat family 70 118 IPR002885 -
Cca07g02182 497 Pfam PPR repeat family 335 382 IPR002885 -
Cca07g02182 497 Gene3D Tetratricopeptide repeat domain 129 202 IPR011990 GO:0005515
Cca07g02182 497 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 217 487 - -
Cca07g02182 497 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 185 215 - -
Cca07g02182 497 Coils Coil 493 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02182 Cca-Chr7 49985477 49987447 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02182 58 485 Glycoside Hydrolase AT3G49170 32.558 6.47e-75 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02182 - - gmx:100790367 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02182 07 49985477 49987447 Cca11g01975 11 45167843 45170374 ECH
Cca07g02182 07 49985477 49987447 Cca07g02182 07 49985477 49987447 ECH