Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01949 ATGGTCGGCAACAAGTCAAAGAAGTTGAAAGTTGAAGAAAATTTCAAGCATAATATTAACGAAGAACTCGTCCTTTCCTTTGAGAAATTTCAAGAAGTACAAGATAAGCTTGAAAAGATCAATGAAAAGCAATGTGTTAAGTTTCTCAAAATTGCACAAAAGTACAATGAGAAAAGGAAGCCAGTTTATGATATGCGAAATGAGATCACCAAATTAATTCCTTATTTCTGGTTGACTGCTTTTATGAGTCATCCTGTCCTCTATGACATTTTGAACTATGAGGATCGAAAGATGTTTAAGTATATGCACTCTCTTGAGGTTGAAGATAACAAAGATGTCAACTCAGACTACAAAATAAACTTTAATTTCAATCCTAATCCATATTTTGAGAATACAAAGCTTACAAAGGCTTTTACCATCCTTGAAGATGGAACAAAAAAGATAACTGCTAGCCCCATAAAATGGAAAGAGGGCAAGGGAATACGCAGTGGAGTCGATCATGACAAGAAAAGGAACAAGCGGTTTGATTCCAGTTTCTTTCGTTGGTTTAGTGATTGTAAGCAGAAAGATGATATGCATGACATTCATGATGAGGTTGCTGAATTAATAAAGAACGAGTTATGGCCAAATCCACTTTCGTCTTTCAACAATgaggatgatgaagaggatgttgatgatgaGGAAAATgatgaggatgacattgaagatgaagaggaggaaaacaaagacgagaatgaggataaagatgaagatgGACCACCCTACAAGGTTTCTAGCATGTTGAGTTCAGCTCCAAAACTGATATGCGTAAGTGGATATCCATGGTCAATCTCTCAAGCATTGTTGTCCAAAAATGATAGAAATTTTGAACGACGTGTTATTTTCGGGCTTGATGAATAA 900 0.3178 MVGNKSKKLKVEENFKHNINEELVLSFEKFQEVQDKLEKINEKQCVKFLKIAQKYNEKRKPVYDMRNEITKLIPYFWLTAFMSHPVLYDILNYEDRKMFKYMHSLEVEDNKDVNSDYKINFNFNPNPYFENTKLTKAFTILEDGTKKITASPIKWKEGKGIRSGVDHDKKRNKRFDSSFFRWFSDCKQKDDMHDIHDEVAELIKNELWPNPLSSFNNEDDEEDVDDEENDEDDIEDEEEENKDENEDKDEDGPPYKVSSMLSSAPKLICVSGYPWSISQALLSKNDRNFERRVIFGLDE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01949 299 Gene3D - 3 73 - -
Cca11g01949 299 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 3 245 - -
Cca11g01949 299 Coils Coil 217 247 - -
Cca11g01949 299 MobiDBLite consensus disorder prediction 216 247 - -
Cca11g01949 299 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 3 245 IPR002164 GO:0005634|GO:0006334
Cca11g01949 299 SUPERFAMILY NAP-like 13 215 IPR037231 -
Cca11g01949 299 Pfam Nucleosome assembly protein (NAP) 71 216 IPR002164 GO:0005634|GO:0006334
Cca11g01949 299 Gene3D Nucleosome assembly protein 74 220 - -
Cca11g01949 299 MobiDBLite consensus disorder prediction 210 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01949 Cca-Chr11 44884067 44892225 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01949 K11290 - gmx:100810307 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00573 03 9797767 9801761 Cca11g01949 11 44884067 44892225 ECH
Cca11g01949 11 44884067 44892225 Cca11g01949 11 44884067 44892225 ECH