Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00573 ATGGTGGCCGACAGGAGCAAGAAGCTGAAGGTTTCCGACAAGGGCGAGAACCTCGACGACATCGACGGAGAACTCGTCCTCTCCATCGAGAAATTGCAGGAGATCCAAGACGAGCTCGAGAAGATCAATGAGGAAGCCAGCGACAAAGTCCTCGAGATAGAGCAGAAGTATAATGAGATACGGAAGCCTGTTTATGATAAGAGGAATGATATTATCAAGGCTATTCCTGATTTCTGGTTAACTGCTTTTTTGAGTCATCCTGCTCTCGGTGATCTTTTGAACGACGAAGATCAGAAGATATTTAAGTATTTGAGTTCTCTGGAGGTTGAAGATTTTAAAGATGTTAAATCAGGCTACTCCATCACCTTTAATTTCAATGCCAATCCCTATTTCGAGGATACAAAAATTGTAAAGACTTATACCTTCCTCGAGGAAGGAACAACAAAGGTTACTGCTACTCCCATAAAATGGAAAGAGGGCAAGGGCGTACCTAATGGAGTTAGTCATGAGAAAAATGGGAACAAGCGGGCTCCTACTGATGTCAGCTTCTTTAGTTGGTTTAGTGACACTGAGCAGAAAGATGATATGGATGACATCCATGATGAGGTGGCAGAGTTAATCAAGGATGATTTATGGCCAAATCCACTCACTTATTTCAACAATGAAGAACCtgacgaagaggaaggtgatgaggatgaagctgatgatgagCAGGGAAAGgatgatgatgactctgaagatgatgacgacgatcaagaggatgacgaagagggtgaggaagatgatgGCAAGTGA 795 0.3698 MVADRSKKLKVSDKGENLDDIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDIIKAIPDFWLTAFLSHPALGDLLNDEDQKIFKYLSSLEVEDFKDVKSGYSITFNFNANPYFEDTKIVKTYTFLEEGTTKVTATPIKWKEGKGVPNGVSHEKNGNKRAPTDVSFFSWFSDTEQKDDMDDIHDEVAELIKDDLWPNPLTYFNNEEPDEEEGDEDEADDEQGKDDDDSEDDDDDQEDDEEGEEDDGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00573 264 Coils Coil 25 59 - -
Cca03g00573 264 MobiDBLite consensus disorder prediction 221 264 - -
Cca03g00573 264 Pfam Nucleosome assembly protein (NAP) 29 73 IPR002164 GO:0005634|GO:0006334
Cca03g00573 264 Pfam Nucleosome assembly protein (NAP) 73 221 IPR002164 GO:0005634|GO:0006334
Cca03g00573 264 Gene3D - 1 75 - -
Cca03g00573 264 SUPERFAMILY NAP-like 8 220 IPR037231 -
Cca03g00573 264 Gene3D Nucleosome assembly protein 76 223 - -
Cca03g00573 264 MobiDBLite consensus disorder prediction 213 264 - -
Cca03g00573 264 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 2 253 IPR002164 GO:0005634|GO:0006334
Cca03g00573 264 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 2 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00573 Cca-Chr3 9797767 9801761 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00573 K11290 - gmx:100808081 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00573 03 9797767 9801761 Cca11g01949 11 44884067 44892225 ECH
Cca03g00573 03 9797767 9801761 Cca03g00573 03 9797767 9801761 ECH