Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01945 ATGGGATCTGGAGCAGGGAATTTCCTTAAGGTGCTTCTCAGAAACTTCGATGTCCTTGCTGGGCCTGTCATTAGTCTTGTTTATCCTCTATATGCTTCAATTAGGGCAATTGAGAGCAAGTCTCCTGTTGATGATCAACAGTGGCTCACTTACTGGGTTCTCTACTCTTTAATGACTCTCTTTGAACTTACTTTTGCTAAAGTCCTTGAATGGATTCCAATATGGCCTTATGCGAAGTTGATTGTAACCTGCTGGTTGGTCCTTCCTTACTTTAAAGGTGCTGCTTATGTTTATGAGCATTATGTAAGACCTTTCTATGTCAATCCTCAGACCGTTAATATCTGGTACGTTCCAAGGAAAAAGGACACCTTGGGTAAGCCAGATGATATTCTAACTGCTGCAGAGAAGTACATCCAAGAGAATGGAACACAAGAATTTGAGAATCTGATCCATAGGGCTGATAAATCAAGAAGTGGTGGCGGTTATTATACAATGTATGATGAGACTTATTGA 513 0.4055 MGSGAGNFLKVLLRNFDVLAGPVISLVYPLYASIRAIESKSPVDDQQWLTYWVLYSLMTLFELTFAKVLEWIPIWPYAKLIVTCWLVLPYFKGAAYVYEHYVRPFYVNPQTVNIWYVPRKKDTLGKPDDILTAAEKYIQENGTQEFENLIHRADKSRSGGGYYTMYDETY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01945 170 PANTHER HVA22-LIKE PROTEINS 4 160 IPR004345 -
Cca11g01945 170 Pfam TB2/DP1, HVA22 family 29 105 IPR004345 -
Cca11g01945 170 PANTHER HVA22-LIKE PROTEIN 4 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01945 Cca-Chr11 44833188 44835510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01945 K17279 - gmx:100808701 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00564 03 9641239 9644974 Cca11g01945 11 44833188 44835510 ECH
Cca11g01945 11 44833188 44835510 Cca11g01945 11 44833188 44835510 ECH