Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00564 ATGGGAGCTGGAAGTTTCCTCAAAGTGGTTCTGAAAAATTTTGATGTTCTTGCTGGGCCTGTGCTTAGTCTTGCGTATCCTCTATATGCATCAGTTAGGGCAATTGAGAGCAAGTCTCCGATTGATGACCAGCAATGGCTCACCTATTGGGTTCTCTATTCCTTGATCACCCTCTTTGAACTTACTTTTGCCAAAGTCCTTGAATGGCTTCCAATCTGGCCATATGCAAAGCTGATCCTTACTTGCTGGTTGGTCATTCCTTACTTCAGCGGCGCAGCCTATGTTTATGAGCACTATGTTAGACCTTTCTTTGTCAACCCTCAGAACGTTAACATCTGGTATGTCCCTAGCAAAAAGGACTCCTTAGGTAAGCCAGAGGACATTCTCACAGCCGCGGAGAAGTACATTGAGGAGCATGGAACTGAAGCATTTGAGAATATGATTAACAAGGCTGGTAAATCTAGGAAAAGTAGAGGGCATGCAAATGGAAGCTATTGA 498 0.4418 MGAGSFLKVVLKNFDVLAGPVLSLAYPLYASVRAIESKSPIDDQQWLTYWVLYSLITLFELTFAKVLEWLPIWPYAKLILTCWLVIPYFSGAAYVYEHYVRPFFVNPQNVNIWYVPSKKDSLGKPEDILTAAEKYIEEHGTEAFENMINKAGKSRKSRGHANGSY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00564 165 PANTHER HVA22-LIKE PROTEINS 1 160 IPR004345 -
Cca03g00564 165 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Cca03g00564 165 PANTHER HVA22-LIKE PROTEIN 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00564 Cca-Chr3 9641239 9644974 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00564 K17279 - gmx:100527841 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00564 03 9641239 9644974 Cca11g01945 11 44833188 44835510 ECH
Cca03g00564 03 9641239 9644974 Cca03g00564 03 9641239 9644974 ECH