Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01942 ATGCATGGCATTTGCAACAAACACGTGCCAGAACCGCCGTTGGCGAGAGAGGGAGTCATAAGCTCCACAAAACTGCAAAATACCCAGTTGAGCTTTCTAGCTCCTTCTAAATTCGTTCATCATTTCCATTCAAAACAGTGGAGTTCATCCTTTAGGGTTTCAACGGACGAGCGAAACTCGTGTAAGCAGGAGAACCAATTCGTTTGCAATACTTTTCACTCGATGGATCTCTCAAACAATAAGCGCCAACCAGAAGGAGATGAAAAGCAAGTTGTGTCTAGAAAGTTGTCCAAAATTTCAGATGATCATAAGGATGAGGAGGATACGAAGGTGGATATGACTTCTCTAATCCCTTTCCAGTACCAAGGGAATGATCAAAATCACTCACCTTCGCTTATTCCCCAACTAGGCCGAGACATCTCCATGAGTTGTCTCCTACGATTGTCAAGATCTGATTACGGATCAATTGCCTCATTGAACCGAACTTTTCGATCTGTCATTCGGACTGGAGAACTGTATCAGCTCAGGCGAAAAATGGGTATCGTAGAATATTGGATTTACTTCTTTTGTGACATCCTTGAATGTGAGGCATTTGATCCAAATCGTGGTCGTTGGATGCACGTGCCTAGAATGGCTTCTAATCAATGCTTTATAAGTATAGATAAGGAGTCGTTGGCCGTTGGTATGGAACTTCTTGTTTTTGGAAGGGAAAGAATGACTCGTGTTGTTTATAGATATAGTATTTTGACAAACTCCTGGTTATCTGGCCCAGAAATGAATGTTCCTAGACGCTTGTTTGCATCTGCTAGCCTTGGAGAAATTGCCATAGTGGCTGGTGGTTGTGATCATCGCAGCAAGATCTTGAGTGTAGTTGAGCTTTATAACTCAAATACCAAAACGTGGGAGACTCTTCCAAACATGAATAAAGCTAGGAAGATGTGTTCTGGTGTTTTTATGGATGGGAAATTTTATGTCCTTGGTGGGATTGGAGAAGGCCGTACAATGCAGCTAACATGTGGTGAGGAGTTTGATTTAAAGACAAGAAAATGGCGCGAAATACCCAACATGTTCCCTCCTCAAACTAGAGAAGTTGGGGTGGCTGAGAGAATATTCATTACTGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTATTGTATGCTGCAAATTACTTACAGTGGGAAGTAAGGAGATATGTTAAAGAGAGGAACAAATGGGTCACCATTGGAAGCCTTCCTGAGGGAGCAACCTCTTTGAATGGTTGGGGATTAGAATTTCGGGCATGTGGAGATCAACTAGTTGTTATTGGTCTGGGTAAAACGGCGTTTGAAATTAATTCTTGGGTACCAGATGACGGTGCACCACATTGGAACCTGCTTGCCAGAAGAGAATCAAGGGGCTATGTGTATAATTCCATAGTGATGGGATGTTGA 1434 0.4254 MHGICNKHVPEPPLAREGVISSTKLQNTQLSFLAPSKFVHHFHSKQWSSSFRVSTDERNSCKQENQFVCNTFHSMDLSNNKRQPEGDEKQVVSRKLSKISDDHKDEEDTKVDMTSLIPFQYQGNDQNHSPSLIPQLGRDISMSCLLRLSRSDYGSIASLNRTFRSVIRTGELYQLRRKMGIVEYWIYFFCDILECEAFDPNRGRWMHVPRMASNQCFISIDKESLAVGMELLVFGRERMTRVVYRYSILTNSWLSGPEMNVPRRLFASASLGEIAIVAGGCDHRSKILSVVELYNSNTKTWETLPNMNKARKMCSGVFMDGKFYVLGGIGEGRTMQLTCGEEFDLKTRKWREIPNMFPPQTREVGVAERIFITEAPPLVAVVNNVLYAANYLQWEVRRYVKERNKWVTIGSLPEGATSLNGWGLEFRACGDQLVVIGLGKTAFEINSWVPDDGAPHWNLLARRESRGYVYNSIVMGC 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01942 477 SMART kelc_smart 230 273 IPR006652 GO:0005515
Cca11g01942 477 SMART kelc_smart 274 321 IPR006652 GO:0005515
Cca11g01942 477 SUPERFAMILY Kelch motif 193 438 IPR015915 GO:0005515
Cca11g01942 477 MobiDBLite consensus disorder prediction 80 107 - -
Cca11g01942 477 Pfam Kelch motif 310 356 IPR006652 GO:0005515
Cca11g01942 477 Pfam Kelch motif 262 308 IPR006652 GO:0005515
Cca11g01942 477 Gene3D - 189 469 IPR015915 GO:0005515
Cca11g01942 477 MobiDBLite consensus disorder prediction 78 107 - -
Cca11g01942 477 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 39 477 - -
Cca11g01942 477 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 39 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01942 Cca-Chr11 44807258 44809369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01942 136 355 Miscellaneous Gene Families AT4G33900 26.407 1.72e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01942 - - gmx:100788507 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00556 03 9535976 9540718 Cca11g01942 11 44807258 44809369 ECH
Cca11g01942 11 44807258 44809369 Cca11g01942 11 44807258 44809369 ECH