Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00556 ATGTTGGAGGGTCCAACCTTTCTTGTTTCGAGGGACTTACCGAGCTCATGTGAGCAAGAGACCAGGTGGATTTACAATTCCTTCTGTGTCATGGAGCTCGGGAACAGTAAACGTCGACTGGAGCTAGAGGAAGATGCTGTTGGGTTGAAAAAGTCATGCAAGCTTTCAGACCCTCATGAGGAAGGGGAAACAAAGAAGAATATCCAAGATCTTTCCCTGTTTGTTAACCAAGCGAATGACCAAAATCATGCAAGTGATCAGTCAGATTCAAGTTCGCTTATCTTTCAGCTTGGTCGGGACATCTCTATTAATTGTCTCCTACGATGCTCAAGGTCTGACTATGGTTCGATTGCCTCATTGAACCAAAGTTTTCGATCTCTCATCCGGACTGGAGAGCTTTATAGGCTGAGGCGCCAGATGGGTATCATAGAGCATTGGGTTTACTTCTCATGTAATCTCCCCGAATGGGAGGCATTTGATCCCAACACTGGTCGATGGATGCGCTTGCCTAGAATGCCTTCTAATGAATGCTTCATCTGTTCAGATAAGGAGTCATTGGCTGTTGGTACTGAGCTTCTTGTTTTTGGAAAGGAAATAATGTCACCTGTCATTTACAGATATAGCATCTTGATGAACTCATGGTCATCTGGTATGGAAATGAATGTTCCTAGATGCTTGTTTGGTTCTGCTAGCCTCGGAGAAGTTGCCATATTAGCTGGTGGATGTGATCCACGTGGCAACATCTTGAGCTCAGCTGAGCTTTATAACTCAGAAACTGGAACGTGGGAGCTTCTTCCAAACATGAATAAAGCAAGGAAAATGTGTTCCGGTGTATTTATAGATGGGAAATTTTATGTCATTGGCGGAATTGGAGTAGGTAACTCTAGGCAGCTAACATGCGGTGAGGAGTTTGATATGCAGACAAGGAAATGGCGGGAAATACCCAACATGTTCCCTGGGAGAAATGGTGGATCTGAGGCGATTGACGTATCGGCTGCTGCTGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTATTGTATGCTGCAGATTATGCCCAACAAGAGGTAAGGAAATATGATAAAGACAGTAATTCATGGATCACTATTGGAAGATTACCTGACCGGATAGTATCGATGAATGGCTGGGGATTAGCCTTTCGGGCATGTGGAAATCGTCTAATTGTTATTGGTGGGCCAAGAGCTTTAGATGGAAGGGTAATTGAGATCAATGCTTGTGTCCCTGGTGAAGGTGAACCACAGTGGAACCTGCTTGCTAGCAGGCAATCAGGGAGCTTTGTGTATAACTGCGCAGTGATGGGATGCTAA 1329 0.447 MLEGPTFLVSRDLPSSCEQETRWIYNSFCVMELGNSKRRLELEEDAVGLKKSCKLSDPHEEGETKKNIQDLSLFVNQANDQNHASDQSDSSSLIFQLGRDISINCLLRCSRSDYGSIASLNQSFRSLIRTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNTGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNVPRCLFGSASLGEVAILAGGCDPRGNILSSAELYNSETGTWELLPNMNKARKMCSGVFIDGKFYVIGGIGVGNSRQLTCGEEFDMQTRKWREIPNMFPGRNGGSEAIDVSAAAEAPPLVAVVNNVLYAADYAQQEVRKYDKDSNSWITIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGEPQWNLLASRQSGSFVYNCAVMGC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00556 442 Pfam Kelch motif 271 317 IPR006652 GO:0005515
Cca03g00556 442 Pfam Kelch motif 223 269 IPR006652 GO:0005515
Cca03g00556 442 SUPERFAMILY Kelch motif 151 439 IPR015915 GO:0005515
Cca03g00556 442 Gene3D - 136 419 IPR015915 GO:0005515
Cca03g00556 442 SMART kelc_smart 283 330 IPR006652 GO:0005515
Cca03g00556 442 SMART kelc_smart 235 282 IPR006652 GO:0005515
Cca03g00556 442 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 442 - -
Cca03g00556 442 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00556 Cca-Chr3 9535976 9540718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00556 91 335 EF-hand Containing Proteins AT4G39560 27.711 1.81e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00556 - - gmx:100788507 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00556 03 9535976 9540718 Cca11g01942 11 44807258 44809369 ECH
Cca03g00556 03 9535976 9540718 Cca03g00556 03 9535976 9540718 ECH