Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01939 ATGTCTAAGGTATTGTTGATCTTATGTATTCTCTCGGGGCTTCTGCTCCTTGCTCAGGCACATGACCATCATAAGAAAATTAAATTTTATCAGCTGGAGAGAGAAAATTTCAAGTTGAATTTGACAAATTACGGTGCTACAATTATCTCTGTCATAACACCTGATAAACACGGGAAACTAGCCGATATTGTTCTTGGCTACGACTCCATTGATTCTTATAAGAATGATACATGTTATTTTGGTGCCATTATTGGACGTGTGGCAAATAGGATTGGAGGAGCTAAATTCACTTTGGATGGCAAAACCTACAAATTGCCTGTTAATGATCACGGGAACACACTTCATGGTGGCACAAGAGGCTTCAGTGATGTTGTTTGGTCAGTGGAATCCCACAAGAAACACAGTCATGTAACATTTTCCTATGACAGTTTTGAAAATGAAGAAGGCTTTCCCGGAAAATTGAAGGTGTCTGTGACTTACAAGCTTGTTGGTAAACACAATTTGTTTGTGAAAATGATTGCCAAGGCAGTGGACAAAGCCACACCAGTGAATCTAGCGCAGCATACCTATTGGAACCTTAGGGGCCACAACAGTGGAGACATTCTTTCTCACATTGTTCAAATCTTTGGCTCACACATCACACCAGTGGATGAAGTTCTCATCCCCACTGGCGAAATCATATCTGTTAAGGGTACCCCATATGATTTCCTTGAACCAAGAAAAATTGGAAGCAAGATTCATGACCTTCCTGGTCTATATGACATGAACTATGTGCTAGACAGAAGTTTCCAAAAGCACTTAAGTAAGTCTGTTGAGGTGAGAGACCCTGTCTCTGGGAGGAAAATGGAGCTGTGGTCAAACCAACTTGGTCTGCAGTTCTATACTAGTGGCCAGTTGAATGCTACCAAAGGCAAGGATGGAGCCATATACCACAAGTATGCTGGCATTGCCTTGGAGACTCAAGGCTTCCCAGATTCTGTGAATTACCCTTACTTTCCATCACAGATTGTGAAGCCTGGGGAGATTTATGAGCACGTCATGCTTTACAGATTGACAGCTAGCTAA 1065 0.4188 MSKVLLILCILSGLLLLAQAHDHHKKIKFYQLERENFKLNLTNYGATIISVITPDKHGKLADIVLGYDSIDSYKNDTCYFGAIIGRVANRIGGAKFTLDGKTYKLPVNDHGNTLHGGTRGFSDVVWSVESHKKHSHVTFSYDSFENEEGFPGKLKVSVTYKLVGKHNLFVKMIAKAVDKATPVNLAQHTYWNLRGHNSGDILSHIVQIFGSHITPVDEVLIPTGEIISVKGTPYDFLEPRKIGSKIHDLPGLYDMNYVLDRSFQKHLSKSVEVRDPVSGRKMELWSNQLGLQFYTSGQLNATKGKDGAIYHKYAGIALETQGFPDSVNYPYFPSQIVKPGEIYEHVMLYRLTAS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01939 354 PIRSF GALM 17 354 IPR015443 GO:0016853|GO:0019318
Cca11g01939 354 Gene3D - 17 353 IPR014718 GO:0030246
Cca11g01939 354 CDD galactose_mutarotase_like 30 350 - -
Cca11g01939 354 PANTHER ALDOSE 1-EPIMERASE 3 354 - -
Cca11g01939 354 PANTHER ALDOSE-1-EPIMERASE 3 354 - -
Cca11g01939 354 Pfam Aldose 1-epimerase 30 350 IPR008183 GO:0005975|GO:0016853
Cca11g01939 354 SUPERFAMILY Galactose mutarotase-like 22 351 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01939 Cca-Chr11 44771974 44774347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01939 14 353 Miscellaneous Gene Families AT3G47800 60.588 6.53e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01939 K01785 - gmx:100806956 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00554 03 9467031 9470172 Cca11g01939 11 44771974 44774347 ECH
Cca11g01939 11 44771974 44774347 Cca11g01939 11 44771974 44774347 ECH