Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00554 ATGATGTTCAAGGTGTACCTTGTTTCTTCTTTTCTCTTGGGGCTTCTGCTCCTTGCTCAAGCAAATGGAAATGATAAAAAGATTGGGTTTTATGAACTCAAGAGAGGAAATATGAGGCTGAATTTGACAAATTATGGTGCTACAATTGTCTCCGTCATCGTACCTGATAAACATGGGAAATTAGGTGACATTACGCTTGGCTACGATGATATTGAGCAATACAAGAATGACACATGGTACTTTGGAGCTCTTGTTGGACGTGTAGCCAACAGAATTGGTGACGCTAAGTTCACATTGGACGGTCATAAATATAAATTGCCTGCTAATGATCACGGGAACACACTCCACGGTGGTTTCACAGGGTTCGGTGATGTTGTTTGGAACGTGAAAAGTCACAAGGAAGATAGCTACATAACATTTACCTACGACAGTCATGATAATGAACAAGGGTTCCCCGGAAGACTTGAAGTTGCTGTGAGCTACATGCTGATTGGCACAGACAAGTATGTAGTGAAAATGATTGCGAAGCCATTGGACAAAGCCACACCAGTGAACCTAGCTCAGCACACATACTGGAATCTAGGTGGGCACAACAGTGGTGACATTCTCTCACACCAGGTTCAGATTTTTGCCTCAAACATCACACCAGTGGACCAAAAACTCATCCCCACTGGAAAGTTCCAATCCGTGAAGGGCACCCCTTATGACTTCCTTGAGCCAAGGGAAGTAGGAAGCAAAATCCATGACCTACCTGGCCTCTATGACATGAACTACGTGCTTGATAAAGGTAGCAATCAGCACTTCAGGAAAGTGGTCATAGTGAAGGATAATGTCTCTGGGAGGAAGCTAGAGTTATGGTCAAACCAACCTGGTTTGCAGTTCTACACTAGTGGCATGTTGACAAGTACTAAGGGTAAGGGTGGTGCCACTTACAATAAGTATGGTGGCATTGCATTGGAGACACAAGGGTTCCCTGATTCTGTGAATCATCCAAATTTCCCATCACAGATTGTGCGTCCTGGAGAGATATACAAGCACTACATGGTATACAGATTCACTGCTAGCTAA 1068 0.4382 MMFKVYLVSSFLLGLLLLAQANGNDKKIGFYELKRGNMRLNLTNYGATIVSVIVPDKHGKLGDITLGYDDIEQYKNDTWYFGALVGRVANRIGDAKFTLDGHKYKLPANDHGNTLHGGFTGFGDVVWNVKSHKEDSYITFTYDSHDNEQGFPGRLEVAVSYMLIGTDKYVVKMIAKPLDKATPVNLAQHTYWNLGGHNSGDILSHQVQIFASNITPVDQKLIPTGKFQSVKGTPYDFLEPREVGSKIHDLPGLYDMNYVLDKGSNQHFRKVVIVKDNVSGRKLELWSNQPGLQFYTSGMLTSTKGKGGATYNKYGGIALETQGFPDSVNHPNFPSQIVRPGEIYKHYMVYRFTAS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00554 355 Gene3D - 19 354 IPR014718 GO:0030246
Cca03g00554 355 PANTHER ALDOSE 1-EPIMERASE 4 355 - -
Cca03g00554 355 CDD galactose_mutarotase_like 31 352 - -
Cca03g00554 355 PANTHER ALDOSE-1-EPIMERASE 4 355 - -
Cca03g00554 355 Pfam Aldose 1-epimerase 31 351 IPR008183 GO:0005975|GO:0016853
Cca03g00554 355 PIRSF GALM 18 355 IPR015443 GO:0016853|GO:0019318
Cca03g00554 355 SUPERFAMILY Galactose mutarotase-like 24 352 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00554 Cca-Chr3 9467031 9470172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00554 5 354 Miscellaneous Gene Families AT3G47800 60.000 1.80e-158 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00554 K01785 - gmx:102659620 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00554 03 9467031 9470172 Cca11g01939 11 44771974 44774347 ECH
Cca03g00554 03 9467031 9470172 Cca03g00554 03 9467031 9470172 ECH