Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01901 ATGATCGATCGGAAATTGCAATGCGAAGAGATGAAAAGAGGGAGAGTAGGCAAGAGTTTGGTGGCATTGAGCAGGCAACGCTTCATTTACATTCTCATCGCTCTTGCGCTTTTCTACCTTGTCTTCTTCACCCTCGAAATCCCCTTCGTCTTCACACTCACGCAACACCAACCCTCTCCCACTCGCGCCCACCCTCACGTTCACTTTCGCCGCCCAAACGGTGTCGTCTCCGGCTTGTTGCTAAACCACGCCGCATTCGATTCGGACCTCTACCAATCCGCCTGCCGTGCGGGGAAGGCCGTTTGGGCCGACCTGCAATCGCCAGCCCTCGTTTGGAAGCCCCAGAACCGATCTGGGCCTTGCCCCCGCTCTGTCTCCGTGTCTGGGCCTGAGTTTCTGGGCCGCGGGAGTGTCATGGTCATTCCCTGTGGCCTCACGTTGGGCTCCCACGTTACGGTGGTTGGGAAGCCCTTGAGGGCGCAACGGAGGAGGTGTCAGTTCGTGATGGAGTTGCAGGGGTTGGAGACCGTGGAGGCTGAAGACCCACCTAGGGTCTTGCATTTCAATCCCAGGCTTAAAGGGGATTGGAGTGGGAAGCCTGTCATTGAGCTCAACACTTGTTATCGCATGCATTGGGGTTCTGCATTGCGTTGTGATGGTTGGAAATCCAGAGCTGCTGAAGATACTGTGGATGGGTTGGTCAAGTGTGAGAAATGGATTGGGGGTGATGATGATGATAGGCATGCGGAGGAGTCCCAGGCAGCATGGTGGTTGAAGAGACTGATAGGTCGGACTAAACATGTAATGGTTGACTGGCCATTTCCATTTTCTGAGAACAAGCTATTTGTTCTTACTCTTAGTGCCGGGTTAGAGGGCTATCATGTTAATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCGCACTGGGTTTACTCTTGAGGATGCCACTGGCCTCTCTTTGAGTGGAGACATTGATGTCCATTCTGTATTTGCTGCCTCTTTGCCTTCGGTGCATCCCAACATTTCCCCGCAGCAGCATCTTGAATTTTTGACCAGATGGCGTGCCCCGACTCTTCCTCGCTTCGGTGTGGAATTGTTCATAGGGATCCTTTCTGCTGGAAACCATTTTGCTGAGCGGATGGCTTTGAGGAGGTCATGGATGCAGCATAGGTTTATCAAATCTTCTAAAGTTGTGGCTCGTTTCTTTGTAGCACTGCATCCAAGGAAAGAAGTTAATGTAGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATGTTGTTATTGTTCCTTACATGGATAACTATGATCTTGTTGTGTTGAAAACGGTGGCCATATGTGAATATGGGGTTTACACAGTTTCTGCGGACTATATAATGAAGGGTGATGATGACACTTTTGTAAAAGTTGATGCTGTTATGAATCTAGCAAGGAATGTTCCATATTCTATGAGCTTTTATATTGGGAACATTAATTTCCACCACAAACCCTTGCGCCGTGGTAAATGGGCTGTAACATATGCGGAGTGGCCACAAGACTATTACCCACCCTATGCTAATGGACCGGGTTATATTTTGTCTTCTGATATTGCACACTATATAGTATCAGAATTTGAGGTTCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTCGAGCAATTTAACAGAACGAATCCAGTTCACTATTTGCATAGCATCAAGTTCTGCCAGTTTGGTTGTGTAGAAAACTATTACACAGCCCATTACCAATCGCCTAGGCAGATGACATGCTTGTGGAATAAATTGCAGAAGCAGACAAGGCCTCAGTGCTGCAACATGAGATAA 1839 0.4796 MIDRKLQCEEMKRGRVGKSLVALSRQRFIYILIALALFYLVFFTLEIPFVFTLTQHQPSPTRAHPHVHFRRPNGVVSGLLLNHAAFDSDLYQSACRAGKAVWADLQSPALVWKPQNRSGPCPRSVSVSGPEFLGRGSVMVIPCGLTLGSHVTVVGKPLRAQRRRCQFVMELQGLETVEAEDPPRVLHFNPRLKGDWSGKPVIELNTCYRMHWGSALRCDGWKSRAAEDTVDGLVKCEKWIGGDDDDRHAEESQAAWWLKRLIGRTKHVMVDWPFPFSENKLFVLTLSAGLEGYHVNVDGRHVTSFPYRTGFTLEDATGLSLSGDIDVHSVFAASLPSVHPNISPQQHLEFLTRWRAPTLPRFGVELFIGILSAGNHFAERMALRRSWMQHRFIKSSKVVARFFVALHPRKEVNVELKKEAEYFGDVVIVPYMDNYDLVVLKTVAICEYGVYTVSADYIMKGDDDTFVKVDAVMNLARNVPYSMSFYIGNINFHHKPLRRGKWAVTYAEWPQDYYPPYANGPGYILSSDIAHYIVSEFEVHKLRLFKMEDVSMGMWVEQFNRTNPVHYLHSIKFCQFGCVENYYTAHYQSPRQMTCLWNKLQKQTRPQCCNMR 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01901 612 SMART Gal_bind_lectin_2 141 332 IPR001079 GO:0030246
Cca11g01901 612 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 137 333 IPR001079 GO:0030246
Cca11g01901 612 SUPERFAMILY Concanavalin A-like lectins/glucanases 139 331 IPR013320 -
Cca11g01901 612 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 78 612 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca11g01901 612 Gene3D - 137 331 - -
Cca11g01901 612 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 78 612 - -
Cca11g01901 612 Pfam Galactoside-binding lectin 138 331 IPR001079 GO:0030246
Cca11g01901 612 Pfam Galactosyltransferase 379 559 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca11g01901 612 CDD GLECT 141 331 IPR001079 GO:0030246
Cca11g01901 612 Gene3D - 363 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01901 Cca-Chr11 44265786 44269034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01901 22 612 Glycosyltransferase AT1G74800 60.366 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01901 K20843 - gmx:100800292 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00531 03 8881581 8885005 Cca11g01901 11 44265786 44269034 ECH
Cca11g01901 11 44265786 44269034 Cca11g01901 11 44265786 44269034 ECH
Cca11g01901 11 44265786 44269034 Cca03g00531 03 8881581 8885005 PCT