Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00531 ATGAAGCCAAAGCTAGAAACGCTCCTATGGTTAACACGAAAGCGATCCATTCAGTTTCTCATCGTAGCATCGCTCTTCTACCTCGCACTCGTAACGCTCGAAATCCCCTTCGTTTTCAAGGCAGACTTCACCGCCGTCGCCACGCGCCCCCCCAGCCTCCGCAGCCAGGAGGACTCGCACCACCGCCACTCCCCCGCGCGCCCTCTCAAAACCGTCTCCAACGCCGACTCGCCGAGTCAACTCGCTCGCCGAGTCAGCGTCGTTTCCGCGTTGGTCCTCGACGACGCCGCCTTCCACCGCAGCGCCAACGACGGCTCGCTCCAGCTCTACAAGCTCGTCAGGCACGCGCGCCAGCCGTTGGCGGCACGGCCTGATTTTGAGCCGAGGATCACGGTGGTGACGGAGGATGAGGCGGTGATGGTGTCGCAGTTTGTGGTGGAGTTGCAGGGGTTGAAAACTGTTGATGGCGAAGAGCCTCCTAGGGTTTTTCACTTCAACCCGAGGTTGAAAGGGGATTGGAGTGGCAAACCCGTCATTGAACTCAACACCTGCTACCGCATGCAGTGGGGTTCCGCTCTCAGGTGCGACGGTTGGAAATCAAAGGCCGATGAAGATACTGTTGATAGGATGGTGAAGTGCGAGAAGTGGATTAGGGATGATGAAGATCACTTGGAGGAGTCTAAGGCGACGTGGTGGTTGAATCGGCTGATAGGGCGCACGAAGAAAGTAACGGTGGACTGGCCATTTCCGTTTTCTGAGGGCAAGCTTTTTGTTCTTACTATTAGTGCTGGGTTGGAGGGGTATCATGTTACTGTTGATGGGAGGCATGTGGCTTCTTTTCCTTATCGCACTGGTTTTACTCTTGAGGATGCTACTGGGCTTTCGTTGACTGGAGACATTGATGTCCACTCTGTATTTGCAGCATCTTTGCCTTCATCACATCCCAGTTTTGCCCCACAGCGGCATCTTGAATATTCCACCAGATGGCGTGCCCAGCCACTCCCTGACACCGGCGTAGAATTGTTCATCGGTGTGCTCTCGGCTGGAAACCATTTTGCTGAGCGGATGGCTGTAAGGAAGTCATGGATGCAGCATAGGCTCGTCAAATCTGGAGTGGCGGTTGCTCGTTTCTTTGTGGCACTGCATGCACGACAAGAAATTAATGCAGAGCTGAAGAAGGAAGCGGAATTTTTTGGTGATATTGTTATTGTGCCTTACTTGGATAATTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCACACAGTTTCTGCCAAGTATATCATGAAAGGTGATGATGACACTTTTGTTAGAGTGGATGCCGTTATTAATGAAGCAAGGAAGGTTCCAGATGATACGAGCTTTTATATTGGGAACATAAATTATTACCACAAACCCTTGCGCTATGGGAAATGGGCAGTGACATATGAAGAATGGCCAGAAGAGGATTACCCACCCTATGCTAATGGGCCGGGATATATTTTATCATCAGATATTGCACACTATATTGTATCAGAATTTGAAATGCATAAATTACGGTTATTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACAGCTCAAAACCAGTACACTACTCGCATAGCTTGATGTTCTGTCAGTTTGGTTGCATAGAAGACTATTTCACGGCCCATTACCAATCACCTAGGCAGATGATGTGCCTGTGGGATAAACTGCAGAGGCAGACAAGGCCTCAATGCTGCAACATGAGATGA 1764 0.4989 MKPKLETLLWLTRKRSIQFLIVASLFYLALVTLEIPFVFKADFTAVATRPPSLRSQEDSHHRHSPARPLKTVSNADSPSQLARRVSVVSALVLDDAAFHRSANDGSLQLYKLVRHARQPLAARPDFEPRITVVTEDEAVMVSQFVVELQGLKTVDGEEPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEDTVDRMVKCEKWIRDDEDHLEESKATWWLNRLIGRTKKVTVDWPFPFSEGKLFVLTISAGLEGYHVTVDGRHVASFPYRTGFTLEDATGLSLTGDIDVHSVFAASLPSSHPSFAPQRHLEYSTRWRAQPLPDTGVELFIGVLSAGNHFAERMAVRKSWMQHRLVKSGVAVARFFVALHARQEINAELKKEAEFFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVRVDAVINEARKVPDDTSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIAHYIVSEFEMHKLRLFKMEDVSMGMWVEQFNSSKPVHYSHSLMFCQFGCIEDYFTAHYQSPRQMMCLWDKLQRQTRPQCCNMR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00531 587 Gene3D - 333 584 - -
Cca03g00531 587 CDD GLECT 142 306 IPR001079 GO:0030246
Cca03g00531 587 Pfam Galactoside-binding lectin 140 306 IPR001079 GO:0030246
Cca03g00531 587 MobiDBLite consensus disorder prediction 50 78 - -
Cca03g00531 587 SMART Gal_bind_lectin_2 118 307 IPR001079 GO:0030246
Cca03g00531 587 Pfam Galactosyltransferase 354 534 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca03g00531 587 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 141 587 - -
Cca03g00531 587 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 141 587 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca03g00531 587 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 114 308 IPR001079 GO:0030246
Cca03g00531 587 Gene3D - 129 306 - -
Cca03g00531 587 SUPERFAMILY Concanavalin A-like lectins/glucanases 142 306 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00531 Cca-Chr3 8881581 8885005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00531 4 587 Glycosyltransferase AT1G74800 58.422 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00531 K20843 - gmx:100816777 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00531 03 8881581 8885005 Cca11g01901 11 44265786 44269034 ECH
Cca03g00531 03 8881581 8885005 Cca03g00531 03 8881581 8885005 ECH
Cca11g01901 11 44265786 44269034 Cca03g00531 03 8881581 8885005 PCT