Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01890 ATGTCGTCGTCACAGCAGAACATCAAGCAGAGAGTCTTCGCGTGCCTGACCAAACTCTCCGACCGCGACACGCAGTCCCTCGCCGCCGCGGAGCTCGAGTCCGTCGCCCGGAGCCTCGACGCCGCCGCCGTGCCGGCGTTCCTCTCGTGCATGTACTCCACCGACGCGTCGGACAAACCGACGGTACGCAAGCAATGCGTGCAGCTGCTAGGGTTCCTCGCGGAGACGCACGGCAACTTGCTCGCGCCGCACGTGGCGAAGATCCTCGGCAGCGTCGTGCGGCGGCTCCGAGACGCGGACTCGTCGGTGCGATCCACGTGCGTGAGTTCCGTCGCGGCATTGTCGCGCCACGTCAGCAAGCAGCCGTTAGGTTCGTTCGTGAAGCCGTTGGCGGAGGCACTGTTCACGGAGCAGGACCAGAACGCGCAGGCCGGCGCGGCGCTGTGTCTCGCCGCGGCGATCGACGGAGCTCCGGATCCGGACCCGGCCAGGCTCGCGAAGCTGCTGCCGAGGTTCGAGAAGCTTCTGAAGCGCGACGGCTTCAAGGCTAAGCCGGCGCTGCTGACGCTTGTCGGAAGCGTCGTCGCCGGCGGCGGCGCGTCCGGCTACGCGCCGCTGAGGAGTTTGGTTCCGTGCTTGGTGGAGTCGCTGAGCAGCGACGATTGGTCAACGCGGAAGGCCGCGGCGGAGGCTCTCGTGGTTGTTGCCAATGTGGAGAGGGAGTTCTTGCCGGAGTTCAAGGCTGAGTGTGTGAAGGTCTTCGAGAATCGACGTTTTGATAAGGTAAAGTTAGTCCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCTTGTGAAGTTTCGCCGCTTCCTAAATCGCAATCTTCTTCCAAAGAGAATGCAAGTGATGGGCGGTATCCCCCAGTCTCTCAAAATTCATGTAGTCCCGGTTCAGTGATGGCCAATTTGCGGAAGAAATCTTCTCCTTTTAGCAAATTCAGTCCAGCAGATAGTTCTTCTGCCAGCAATGCTAAGAATACCAGTGCTTCAAGTAGTAACAAGAGAATGAGTTCGTTTGTTTCCCGGAAATTAAACCATAAGAATTGGGATGCTCAGATTGCCATGTCTGATTCTCCCTCTGCTGCCGAGGCAGATCAGGGACATCTTCAGGAGAGGGGTGGAATTGTTTTGGATAGGAGCAAAATGGATAAAAGCAGATTTTCAAAACCAGAAATGAAACGGGGACTGCTAAGTAAGAGTTCTGATGATAAAATACAAAGGTATGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGATGAGAGTCAAGACTCAGTTCCTGCCAGTACTGTCACTAAAGATCTCCATAGGAATGACAAAGAGAGTGAAGATTTGTCACTGATTCGTGATCAATTACATCAGATTGAGAAGCAGCAGTCAAGTCTGCTAGATCTTCTGCAGACATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGGCTTGAGTTAGCATTGGATGAAATTTCTTATGATTTGGCTATATCAAGTGGAAGGATGACAAAATCTGATGCTCCTGGTAACACGTGTTGCATGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCTGGAGGAAAACACAGACCCGGTATTCAATGCCACAGTTCTCTAGATCAGCTGGCGCACCATCACTTGCTGCCATGAACTACCCAGCCGACAGAAATCCTGAAACCAAGTTGCCAAACCACAGATTTAGACCTGATGGAGGCTTCATCACTAATCCACTGGCAGAGATTCATACGAATTCGAGGAATGCAATTTAA 1842 0.5304 MSSSQQNIKQRVFACLTKLSDRDTQSLAAAELESVARSLDAAAVPAFLSCMYSTDASDKPTVRKQCVQLLGFLAETHGNLLAPHVAKILGSVVRRLRDADSSVRSTCVSSVAALSRHVSKQPLGSFVKPLAEALFTEQDQNAQAGAALCLAAAIDGAPDPDPARLAKLLPRFEKLLKRDGFKAKPALLTLVGSVVAGGGASGYAPLRSLVPCLVESLSSDDWSTRKAAAEALVVVANVEREFLPEFKAECVKVFENRRFDKVKLVRDVMNQMLEAWKQIPDVSCEVSPLPKSQSSSKENASDGRYPPVSQNSCSPGSVMANLRKKSSPFSKFSPADSSSASNAKNTSASSSNKRMSSFVSRKLNHKNWDAQIAMSDSPSAAEADQGHLQERGGIVLDRSKMDKSRFSKPEMKRGLLSKSSDDKIQRYGGSKAGSRVVPYHDESQDSVPASTVTKDLHRNDKESEDLSLIRDQLHQIEKQQSSLLDLLQTFMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKSDAPGNTCCMLPGAEFLSSKFWRKTQTRYSMPQFSRSAGAPSLAAMNYPADRNPETKLPNHRFRPDGGFITNPLAEIHTNSRNAI 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01890 613 Coils Coil 459 479 - -
Cca11g01890 613 MobiDBLite consensus disorder prediction 422 454 - -
Cca11g01890 613 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 4 611 IPR033337 GO:0005874|GO:0008017
Cca11g01890 613 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 4 611 - -
Cca11g01890 613 Pfam HEAT repeat 209 236 IPR000357 GO:0005515
Cca11g01890 613 SUPERFAMILY ARM repeat 5 273 IPR016024 -
Cca11g01890 613 MobiDBLite consensus disorder prediction 287 358 - -
Cca11g01890 613 Gene3D - 2 390 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01890 Cca-Chr11 44119089 44122518 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01890 - - gmx:100789197 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01890 11 44119089 44122518 Cca11g01890 11 44119089 44122518 ECH
Cca11g01890 11 44119089 44122518 Cca03g00523 03 8683898 8687728 PCT