Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00523 ATGCCTCCCACCACAGCCCAAACGCAGAACACAAAGCAGAGGGTACTCACGTGCCTCACCAAGCTCTCGGAccgcgacacgcacgccgcagccgcaacggaactcgactccatcgcgcgaaccctgcacccgcactccgTTCCGGTGTTCCTCTCATGCATCCACTCCACCGACGCTTCCGACAAAACGCCGGTGCGGAAGCAATGCGTGCACCTCGTCGCCACGCTCTCCCACGCGCACGCCAACGCGCTCTCGCCCTTCCTCTCCAAAATCCTCGCCAACCTCGTGCGCCGCCTCCGCGACCCGGACTCCTCGGTGCGAGCTGCGTGCGCCGACTCCGTCGCCGCACTGTCGGCGCGCGTCACCAGGCAGCCGTTCTCCTCCTTCCTCAAGCCGCTCGCCGAGGCGCTCTTCACGGAGCAGGAGCCGAGCTCGCAGgccgccgccgcgctctgcctcgccgccgcgatcgccgcggcTCCGGATCCGGACGCGCCCAGGCTCGCCAGGCTGCTCCCGAGGTTCGAGAAGCTTCTCAAGAGCAAGGTGTTTAGGGCCAAGCCGGCGCTGCTGGCGCTCGTCGGGAGCGTCGTCGAGGCCGGCGGCGCCGCGAGCCGCGCCGCGCTGAGGAATTTGGTTCCCTGCCTTGTGGAGGCGCTGAGCAGCGAGGACTGGGCCACCAGGAAGGGCGCGGCGGAGGCGTTGAAGAAACTCGCGGTTGCGGAGAGGGACCTCTTGCCGGAGTTCAAGGATGGATGTTTGAAAGTTTTCGAGGATCGGCGATTTGATAAGGTAAAGTTGGTTCGGGAGGTTATGATTCAGATGTTGGAGGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAATATCTCCACCTCCTCAATCGCTGTCTTCTTCTAAGGAGATTGCTAGTGATGGGCGGTATCCTCCTGTCTCTCAAAATTCATGTAGTCCTGGCTCTGTAATGAGTAAATTGAGGAAGAAATCGAGCCCGGTTAGCGGATCAACTCCACCAGATAGATCTGTTGCTAGGAATGCTAAAAGGATGAGTGCATTAAGTGGCAATCGGGCGAGTTCAGGTGTTTTGCAGAAACTGAACCATAACCATTGGGATGTTCGAGTTGCTGTGTCAAATGTTCCTTATCGTGGTGAACCTCAGCGGAGGGATGAAGATGTTTTGGAGAAAAGCAAAAAGGATAAAAGCAGATTTTTTAAGTCGGAAACAAAACGGGCTCTATTCGATAAAAATTCTGATGACAAAATGCATAAGTTTGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCTTGCTCTGAAGAAAGTGAAGACTCAGGTCCTGTCTGTAATGTAACTAAGGATCTCCCTAGGAATGACAAAGAGAGCGAGGAATTATCTTTGATTCGAGCACAGTTAGTTCAAATTGAGAAGCAGCAGTCAGGTCTGCTTGATCTTCTACAGAAATTCATGGGGAGCTCTGAAAATGGAATGCGTTCCTTAGAGACTCGTGTGCATGGCCTCGAGTTGGCATTGGATGAGATTTCTTATGATTTGGCTATATCAAGTGGAAGGATAACTAAATCTGATGCTCCTAAGAATACATGTTGCTTGCTACCTGGTGCTGAATTTTTAAGCTCCAAATTCTGGAAAAAAACACAGGGCCACCATTCATCCTACCGATTCACAAGATCTGGTGATACTCCATCACTAGCTTTGAGTCAGTACAGGGCTAATAGGAATGGTGAAAGCTTTCATCATAGCCACAGATTTGGGGTCCATGGTGATGGAAGTTTCATCACTAATCCTCTGGCAGAGATTAAAATTAATTCAAAGGAGATTTCAGGCTCTGCAAGATCAGAGCAAGCTTGA 1863 0.4874 MPPTTAQTQNTKQRVLTCLTKLSDRDTHAAAATELDSIARTLHPHSVPVFLSCIHSTDASDKTPVRKQCVHLVATLSHAHANALSPFLSKILANLVRRLRDPDSSVRAACADSVAALSARVTRQPFSSFLKPLAEALFTEQEPSSQAAAALCLAAAIAAAPDPDAPRLARLLPRFEKLLKSKVFRAKPALLALVGSVVEAGGAASRAALRNLVPCLVEALSSEDWATRKGAAEALKKLAVAERDLLPEFKDGCLKVFEDRRFDKVKLVREVMIQMLEAWKQIPDVSDEISPPPQSLSSSKEIASDGRYPPVSQNSCSPGSVMSKLRKKSSPVSGSTPPDRSVARNAKRMSALSGNRASSGVLQKLNHNHWDVRVAVSNVPYRGEPQRRDEDVLEKSKKDKSRFFKSETKRALFDKNSDDKMHKFGGSKAGSRVVPCSEESEDSGPVCNVTKDLPRNDKESEELSLIRAQLVQIEKQQSGLLDLLQKFMGSSENGMRSLETRVHGLELALDEISYDLAISSGRITKSDAPKNTCCLLPGAEFLSSKFWKKTQGHHSSYRFTRSGDTPSLALSQYRANRNGESFHHSHRFGVHGDGSFITNPLAEIKINSKEISGSARSEQA 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00523 620 MobiDBLite consensus disorder prediction 288 340 - -
Cca03g00523 620 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 7 613 - -
Cca03g00523 620 Coils Coil 456 476 - -
Cca03g00523 620 SUPERFAMILY ARM repeat 12 376 IPR016024 -
Cca03g00523 620 MobiDBLite consensus disorder prediction 287 360 - -
Cca03g00523 620 Gene3D - 5 379 IPR011989 -
Cca03g00523 620 Pfam HEAT repeat 212 239 IPR000357 GO:0005515
Cca03g00523 620 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 7 613 IPR033337 GO:0005874|GO:0008017
Cca03g00523 620 MobiDBLite consensus disorder prediction 423 445 - -
Cca03g00523 620 ProSiteProfiles HEAT repeat profile. 91 129 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00523 Cca-Chr3 8683898 8687728 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00523 - - gmx:100778310 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00523 03 8683898 8687728 Cca03g00523 03 8683898 8687728 ECH
Cca11g01890 11 44119089 44122518 Cca03g00523 03 8683898 8687728 PCT