Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01880 ATGGAACACAGCACATCCTTCAACGACTCCAAAAACAACCTCTCTTCACAACGCAGCCTCGCCTCAGTCCCTTCCCTCAACTCACACGCTCACCTCCTCAACCTCAACGCATCCCACACGTGTCTCGCCACTCTCAGACCCCACAAAACATCCTACACCTCCTCCCTCACCCTCGCAGGAAAGTTCCTCTACCTAGGCTCCTCCGAGTCACAAGTCCAATCCTGGCATTACTCCCACCACCGACCACCGCCACCCGCCACCGTGGTCACCGCCGGAAACGGCGCCGTGAAGTCCATCGTAGTCCACTCCGACAAACTCTTCACCGCCCACCAAGACCACAAAATCCGCGTGTGGAAGATACACGACCAACACAGCTACACACGTGTGGCCACGCTCCCAACATTAAGCGACCGCGTTTCGAAGATCCTGATTCCCAAAAACCACGTGCGGATTCGGCGGCACAAAAAGTGCACGTGGGTTCACCACGTGGACGCCGTTTCCTCCTTGGCCCTATCCAAAGACGGAAACTTTCTCTACTCCGTTTCATGGGACAGGACAATGAAGATTTGGCGAACCAAAGACTTCGCGTGCTTGGAGTCCGTGCGAGACGCGCACGACGACGCCATAAACGCGGTCGCAGTTTCCCACGATGGACTCGTCTACACTGGATCCGCGGATAAGAGAATCAGGGTTTGGAGAAAAAACGAAGATGATAAGAAACACAAACACAAACACATGTTGGTGGACACGTTGGAGAAGCACAACTCCGGGATCAACGCGTTGGCGCTTAGCGGCGACGGTTCCGTGTTGTATTCGGGTGCATGTGATAGGTCGATATTGGTTTCGGAGAAGGGTGAGAATGGGAAATTGGTGGTGGTTGGTGCGTTGAGGGGGCACACTAGGTCGAttttgtgtttggctgtggtttcggatttggttttTAGTGGTTCTGAGGACAAAACGGTTAGGGTTTGGAGAGGGGTTGAGAAGGATTATTCTTGTTTAGTGATTTTGGAAGGGCATAAGAGTCCGATTAAGAGTTTAACTGCGACGGTTGATCGGAGTGATGACCCCTCCGAAGCTTCTTTTCTTGTTTATAGTGGCAGTTTGGACTCTGATGTTAAGGTTTGGCAGGTTTTTGTTCCTCTTCTTTGA 1155 0.51 MEHSTSFNDSKNNLSSQRSLASVPSLNSHAHLLNLNASHTCLATLRPHKTSYTSSLTLAGKFLYLGSSESQVQSWHYSHHRPPPPATVVTAGNGAVKSIVVHSDKLFTAHQDHKIRVWKIHDQHSYTRVATLPTLSDRVSKILIPKNHVRIRRHKKCTWVHHVDAVSSLALSKDGNFLYSVSWDRTMKIWRTKDFACLESVRDAHDDAINAVAVSHDGLVYTGSADKRIRVWRKNEDDKKHKHKHMLVDTLEKHNSGINALALSGDGSVLYSGACDRSILVSEKGENGKLVVVGALRGHTRSILCLAVVSDLVFSGSEDKTVRVWRGVEKDYSCLVILEGHKSPIKSLTATVDRSDDPSEASFLVYSGSLDSDVKVWQVFVPLL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01880 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 200 IPR001680 GO:0005515
Cca11g01880 384 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 384 IPR045182 -
Cca11g01880 384 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g01880 384 SUPERFAMILY WD40 repeat-like 34 379 IPR036322 GO:0005515
Cca11g01880 384 Gene3D - 148 240 IPR015943 GO:0005515
Cca11g01880 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 325 - -
Cca11g01880 384 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 384 - -
Cca11g01880 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 232 IPR001680 GO:0005515
Cca11g01880 384 Pfam WD domain, G-beta repeat 160 190 IPR001680 GO:0005515
Cca11g01880 384 Pfam WD domain, G-beta repeat 198 232 IPR001680 GO:0005515
Cca11g01880 384 Pfam WD domain, G-beta repeat 333 377 IPR001680 GO:0005515
Cca11g01880 384 Pfam WD domain, G-beta repeat 249 280 IPR001680 GO:0005515
Cca11g01880 384 Pfam WD domain, G-beta repeat 294 325 IPR001680 GO:0005515
Cca11g01880 384 Gene3D - 3 143 IPR015943 GO:0005515
Cca11g01880 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 190 - -
Cca11g01880 384 Gene3D - 241 381 IPR015943 GO:0005515
Cca11g01880 384 PRINTS G protein beta WD-40 repeat signature 106 120 IPR020472 -
Cca11g01880 384 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Cca11g01880 384 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Cca11g01880 384 SMART WD40_4 244 283 IPR001680 GO:0005515
Cca11g01880 384 SMART WD40_4 38 76 IPR001680 GO:0005515
Cca11g01880 384 SMART WD40_4 152 191 IPR001680 GO:0005515
Cca11g01880 384 SMART WD40_4 194 233 IPR001680 GO:0005515
Cca11g01880 384 SMART WD40_4 82 119 IPR001680 GO:0005515
Cca11g01880 384 SMART WD40_4 289 326 IPR001680 GO:0005515
Cca11g01880 384 SMART WD40_4 331 378 IPR001680 GO:0005515
Cca11g01880 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 325 IPR001680 GO:0005515
Cca11g01880 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01880 Cca-Chr11 44023455 44025043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01880 204 378 Acyl Lipid Metabolism Gene Families AT3G18860 28.022 2.26e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01880 - - gmx:100801906 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00510 03 8474984 8476435 Cca11g01880 11 44023455 44025043 ECH
Cca11g01880 11 44023455 44025043 Cca11g01880 11 44023455 44025043 ECH
Cca11g01880 11 44023455 44025043 Cca03g00510 03 8474984 8476435 PCT