Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00510 ATGGAGTACCACCAATCTTATACTACCTCTTCCTCTTCTCACTCCAACCACCACACCCACACCCGCATCCCGGCTTCACAACACAGCCTCGTATCAGTTCCATCTCTCAACACCACCTCACAATCCCACCTCCACACCTACCACCACTGCCTCGCAACCCTCAAAGGCCACACCTCCTACATCTCCTCCCTAACCCTCTCCGGCAAATTCCTCTACACAGCCTCCTCCGACAGAGAAATCCGATCCTGGAACCGCTCCCAACCTCAAAAcaccgccgccgccaccaacaccgtcaccgccGGAAACGGCGCCGTAAAGTCCCTCGTTATGCACTCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAAATcaccaccaccactaccaccaacaacgatgacgacgacgacgaaaagaaggaacacgaccacCTTAAATACACGCACGTGGCGACACTCCCCACCCTCGGGGACCGCGCGGCGAAGGTTTTGATCCCGAAAAACCACGTACAAATCCGAAGGCACAAGAAACGCACGTGGGTTCACCACGTGGACACCGTGTCCGCTCTCGCCCTGTCCAAAGACGGAACCTTGCTGTACTCCGTTTCGTGGGACAGAACAATCAAAATCTGGCGAACCAAAGACTTCACGTGCTTGGAGTCTCTAACCAACGCGCACGACGACGCCATCAACGCCGTCGCGGTTTCTTACGATGGGCGCGTCTACACGGGATCAGCGGACAAGACGATCAAGGTGTGGGCGAAACCAGAAGGGGAGAAGAAACACGCGTTGGTGGAAACGTTAGAGAAGCACAACTCGGGGGTCAATGCCTTGGCTCTGAGCAGCGACGAAACCGTGTTGTATTCTGGTGCATGTGATAGGTCCGTTTTGGTTTGGGAGAAAGACGAAAGTGATGGGAATATGGGGTTGGTGGGTGCGTTAAGGGGACACACCAAGTCCATATTGTGTCTCGCTGTTGTGGCGGATTTGGTTTGTAGCGGTTCCGCTGATAAAACGATTAGGATTTGGAGAGGGGTTGACGCCGAATATTCTTGTTTAGCTGTTTTGGAAGGACACACGGGTTCGATTAAGTGCTTAACCGCAGTGGTTGACCACTGTAACCCCTCCCACTCCCAACTATCTTTTCTACTATATAGTGGCGGTTTGGACTGCCACATTAAGGTTTGGCAGATTTTACTTCCTGCTATCTAA 1227 0.4857 MEYHQSYTTSSSSHSNHHTHTRIPASQHSLVSVPSLNTTSQSHLHTYHHCLATLKGHTSYISSLTLSGKFLYTASSDREIRSWNRSQPQNTAAATNTVTAGNGAVKSLVMHSNKLFSAHQDHKIRVWKITTTTTTNNDDDDDEKKEHDHLKYTHVATLPTLGDRAAKVLIPKNHVQIRRHKKRTWVHHVDTVSALALSKDGTLLYSVSWDRTIKIWRTKDFTCLESLTNAHDDAINAVAVSYDGRVYTGSADKTIKVWAKPEGEKKHALVETLEKHNSGVNALALSSDETVLYSGACDRSVLVWEKDESDGNMGLVGALRGHTKSILCLAVVADLVCSGSADKTIRIWRGVDAEYSCLAVLEGHTGSIKCLTAVVDHCNPSHSQLSFLLYSGGLDCHIKVWQILLPAI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 258 - -
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 258 IPR001680 GO:0005515
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 305 - -
Cca03g00510 408 SUPERFAMILY WD40 repeat-like 48 403 IPR036322 GO:0005515
Cca03g00510 408 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Cca03g00510 408 Pfam WD domain, G-beta repeat 316 348 IPR001680 GO:0005515
Cca03g00510 408 Pfam WD domain, G-beta repeat 356 401 IPR001680 GO:0005515
Cca03g00510 408 Pfam WD domain, G-beta repeat 183 216 IPR001680 GO:0005515
Cca03g00510 408 Pfam WD domain, G-beta repeat 271 304 IPR001680 GO:0005515
Cca03g00510 408 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 93 IPR001680 GO:0005515
Cca03g00510 408 CDD WD40 50 402 - -
Cca03g00510 408 Gene3D - 171 405 IPR015943 GO:0005515
Cca03g00510 408 Gene3D - 5 158 IPR015943 GO:0005515
Cca03g00510 408 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 6 406 - -
Cca03g00510 408 SMART WD40_4 91 128 IPR001680 GO:0005515
Cca03g00510 408 SMART WD40_4 266 305 IPR001680 GO:0005515
Cca03g00510 408 SMART WD40_4 312 349 IPR001680 GO:0005515
Cca03g00510 408 SMART WD40_4 220 259 IPR001680 GO:0005515
Cca03g00510 408 SMART WD40_4 354 402 IPR001680 GO:0005515
Cca03g00510 408 SMART WD40_4 47 84 IPR001680 GO:0005515
Cca03g00510 408 SMART WD40_4 178 217 IPR001680 GO:0005515
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 185 216 - -
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 348 IPR001680 GO:0005515
Cca03g00510 408 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g00510 408 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Cca03g00510 408 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Cca03g00510 408 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 305 IPR001680 GO:0005515
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Cca03g00510 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 84 - -
Cca03g00510 408 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 406 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00510 Cca-Chr3 8474984 8476435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00510 230 403 Miscellaneous Gene Families AT5G08390 25.683 2.58e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00510 - - gmx:100777242 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00510 03 8474984 8476435 Cca11g01880 11 44023455 44025043 ECH
Cca03g00510 03 8474984 8476435 Cca03g00510 03 8474984 8476435 ECH
Cca11g01880 11 44023455 44025043 Cca03g00510 03 8474984 8476435 PCT