Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01872 ATGGGGAATTGCCAAGCCATTGACACTGCAACTCTAGTCATACAACAACCCAATGGGAAAGTAGAAAGGTTGTATTGGCCTGTGAGTGCTAGTGAAGTCATGAAGACCAATCCTGATCACTATGTTGCTCTTCTTATCTCCACCACATTGTGTACCTCCAAGGACAAAGAAAATTGCACAAATAAGAGTGATaacaacaatatcaacaacaccaccaacCCTGTTCGTCTTACCCGAATCAAGCTTCTCAAGCCAACAGATACCCTTATGCTTGGCCAAGTTTATAGACTCATCTCAGCTCAAGAGGTTATGAAGGGTCTTTGGGCAAAGAAACAAGCAAAGATGAAGAGAAACTTGTCAGAATCAGCACAAAAGCCAAATCTGATGAAGGAAAGGACAGACAAAGCAGCAAGGAGGACTGAGCCGGAGGACAATCAGGAAAGCAGACCTGAAAGACATGGGTCAAGGACTAATTCAACTAATAATGGTGTTAGTGCCACAGCTAAGTCAAGAACATGGCAACCCTCTTTACAAAGCATCTCAGAAGCAACCAGCTGA 558 0.4158 MGNCQAIDTATLVIQQPNGKVERLYWPVSASEVMKTNPDHYVALLISTTLCTSKDKENCTNKSDNNNINNTTNPVRLTRIKLLKPTDTLMLGQVYRLISAQEVMKGLWAKKQAKMKRNLSESAQKPNLMKERTDKAARRTEPEDNQESRPERHGSRTNSTNNGVSATAKSRTWQPSLQSISEATS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01872 185 MobiDBLite consensus disorder prediction 127 154 - -
Cca11g01872 185 MobiDBLite consensus disorder prediction 155 185 - -
Cca11g01872 185 PANTHER DUF4228 DOMAIN PROTEIN 1 185 - -
Cca11g01872 185 MobiDBLite consensus disorder prediction 116 185 - -
Cca11g01872 185 Pfam PADRE domain 1 182 IPR025322 -
Cca11g01872 185 PANTHER EXPRESSED PROTEIN 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01872 Cca-Chr11 43899093 43900874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01872 - - gmx:100500500 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01872 11 43899093 43900874 Cca11g01872 11 43899093 43900874 ECH
Cca11g01872 11 43899093 43900874 Cca03g00503 03 8300875 8302837 PCT