Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01858 ATGGCCAAAGAGACCATTATTTGTCAATATCCCATCAAATCACAAGTGCAGGGTGAGAATTTAGATCATCAAAATTCAAAGCTTGTAATATCAGAAACTGATAATGGAGAGGAGAGTAATGGAGCACCTAAAGACACATCTCCTGAGCTTCCAGGGTGGTATGCTGATGCTTCCTGGCCGGGAGAAGCACACATATATAAAATGGAAAAGATCATATTTCAAGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCATCTAGACATGGCAAGGTTGCAATTCTGGATGGATATATCCAACTGACCGAGAATGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTGCACTCTGTTCCATTCTAAATCCAAACAAGGTGCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCATTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTGATTGATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGCTACGAGGATCCCCGAGTGCATGTTCATATCACCGACGGAATTGCGTTCATAAATTCTGTTCCTGAGGGCACTTACGATGTCATTATATTGGATGCTTTTCAACCAATGGGACCTATTGCGGAAGTTCTGGCGGATAACTGCTTCTTAGAATCTGTAGCAAAGGCTCTTCGACCTGGTGGAGTGTTGTCTGCTCCAGCAGACAGCTTGTGGCATGAAAATTTTGTCGTTGCAGATACTATAGCAAATTGCAAGAAGATATTCAAAGGCTCAGTTAACTATGCTTGGACCACAGTTCCTACATATGCAAGTGGGGTGATTGGATTCATGCTTTGCTCCACGGAGGGGCCTCCAGTCAACTTCAAACACCCAATAAATCCACTGAATCCAGAGCAAAATGGAGTAGCAAAGGGACCTCCTAAGTTTTATAACCCAGAGATCCATGCTGCTGCTTTCTGTTTGCCTTCTTTTGTGGACAAGGTTGTTGATCCAACAAGATATTGA 1023 0.4213 MAKETIICQYPIKSQVQGENLDHQNSKLVISETDNGEESNGAPKDTSPELPGWYADASWPGEAHIYKMEKIIFQGKSEFQELLVFESSRHGKVAILDGYIQLTENDEFAYQEMLTHLALCSILNPNKVLLVGGGDGGILREISRHSSVEHIDICEIDKMVIDVYKKFFPDIAVGYEDPRVHVHITDGIAFINSVPEGTYDVIILDAFQPMGPIAEVLADNCFLESVAKALRPGGVLSAPADSLWHENFVVADTIANCKKIFKGSVNYAWTTVPTYASGVIGFMLCSTEGPPVNFKHPINPLNPEQNGVAKGPPKFYNPEIHAAAFCLPSFVDKVVDPTRY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01858 340 CDD AdoMet_MTases 149 236 - -
Cca11g01858 340 TIGRFAM speE: spermidine synthase 53 330 IPR001045 GO:0003824
Cca11g01858 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 53 335 IPR029063 -
Cca11g01858 340 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Cca11g01858 340 MobiDBLite consensus disorder prediction 32 51 - -
Cca11g01858 340 Hamap Polyamine aminopropyltransferase [speE]. 52 336 IPR001045 GO:0003824
Cca11g01858 340 Pfam Spermine/spermidine synthase domain 107 295 - -
Cca11g01858 340 PANTHER SPERMIDINE/SPERMINE SYNTHASE 25 335 IPR001045 GO:0003824
Cca11g01858 340 Pfam Spermidine synthase tetramerisation domain 52 104 IPR035246 -
Cca11g01858 340 PANTHER SYNTHASE 1, PUTATIVE-RELATED 25 335 - -
Cca11g01858 340 Gene3D Spermidine synthase, tetramerisation domain 52 101 IPR037163 -
Cca11g01858 340 Gene3D Vaccinia Virus protein VP39 102 337 IPR029063 -
Cca11g01858 340 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 287 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01858 Cca-Chr11 43740099 43743076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01858 K00797 - gmx:100788406 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00490 03 8008281 8012845 Cca11g01858 11 43740099 43743076 ECH
Cca11g01858 11 43740099 43743076 Cca11g01858 11 43740099 43743076 ECH