Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00490 ATGGAGAATCATCCTTCAAGTGTGATCAACAATGTTAAAATTGGTTTCTCTACTCCAAGTTTCACACATGAAGGAGATGGTGTACATCCACAAATTCCAGGATGGTTTTCAGAGTATTCTCCATTATGGCCAGGACAAGCACACTTCTTGAAGGTAGAAAAGGTTTGTTTCCAAGGGAAATCTGCATACCAGAATATGCTAGTTTTTCAGTCTCCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATCCCTAACCCAAAAAAGGTGCTGCTTATTGGTGGCGGAGATGGTGGCATCCTAAGGGAGATTTCCCGCCACTCGTCTGTTGAACAAATCGACATATGTGAAATAGACACAATGCTAATTGATGTGTATAAAGAATATTTCCCAGACGTGGCTGTTGGATACAAGGACTCTCGAGTCAAGCTTCATGTTGTAGATGGAACTCTTTTTTTGAGTTCTGTCCCAAGGGGTACCTACGATGCAATTATAGTAGATGCCTTCGACCCAATAAGGCCTGATCATGAGCTTTTTGAATCTCAGTTCTTTGAACTGGTTTCAAAGGCTCTTCGACCAGGAGGAGTCTTGTGCATTCAAGCAGAGAGTATTTGGTTTCAATCCTTGGATATTGAAGAACTACTCACCAAATGTCGCCAAACTTTCAAAGGCTCCACTGATTATGCATGGACAACTGTCCCTGCATATCCAAGTGGGGTCATTGGTTTCTTGCTTTGTTCCACCGAAGGTCCATGTGTCGACTTCAGAAGTCCAATTAACCCGATCAATCCCGAAAATTATGGCATATCAAAGCAGCCCTTGAAGTTTTACAATTCAGAAGTTCATTCAGCAGCGTTTTGCTTACCATCTTTTGCCAAAAGGTTCTCTAAGACCAAAGCTAAGAGCACCGCTAAATGGCCGAAATGTTAA 996 0.4227 MENHPSSVINNVKIGFSTPSFTHEGDGVHPQIPGWFSEYSPLWPGQAHFLKVEKVCFQGKSAYQNMLVFQSPTYGKVFVLDGALQLTEKDECAYQEMMTHLPLCSIPNPKKVLLIGGGDGGILREISRHSSVEQIDICEIDTMLIDVYKEYFPDVAVGYKDSRVKLHVVDGTLFLSSVPRGTYDAIIVDAFDPIRPDHELFESQFFELVSKALRPGGVLCIQAESIWFQSLDIEELLTKCRQTFKGSTDYAWTTVPAYPSGVIGFLLCSTEGPCVDFRSPINPINPENYGISKQPLKFYNSEVHSAAFCLPSFAKRFSKTKAKSTAKWPKC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00490 331 Gene3D Vaccinia Virus protein VP39 88 323 IPR029063 -
Cca03g00490 331 Hamap Polyamine aminopropyltransferase [speE]. 34 319 IPR001045 GO:0003824
Cca03g00490 331 Pfam Spermine/spermidine synthase domain 91 277 - -
Cca03g00490 331 PANTHER SPERMIDINE/SPERMINE SYNTHASE 33 320 IPR001045 GO:0003824
Cca03g00490 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 316 IPR029063 -
Cca03g00490 331 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 112 125 IPR030373 -
Cca03g00490 331 PANTHER SPERMIDINE SYNTHASE 33 320 - -
Cca03g00490 331 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 33 270 IPR030374 -
Cca03g00490 331 CDD AdoMet_MTases 133 222 - -
Cca03g00490 331 Pfam Spermidine synthase tetramerisation domain 34 88 IPR035246 -
Cca03g00490 331 TIGRFAM speE: spermidine synthase 35 313 IPR001045 GO:0003824
Cca03g00490 331 Gene3D Spermidine synthase, tetramerisation domain 22 87 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00490 Cca-Chr3 8008281 8012845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00490 K00797 - gmx:100785862 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00490 03 8008281 8012845 Cca11g01858 11 43740099 43743076 ECH
Cca03g00490 03 8008281 8012845 Cca03g00490 03 8008281 8012845 ECH