Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01850 ATGAACACCCCTCACTTCGAAGCCCCTCACTCCCCTCTCTACGACCGCTCCTCCCCTCTCTCCGACGCCGCCGACCCCTTCCACTCGCCCCAAAACTCCCCAGACAACTCCAGACATATCGTAATCCTCGAGACTTCAGCTCAATTCGCCCAGGCCGCGCCCCCCGCCCCCGACTCCGACCACCAACCCCCGCCGCTCAATGTGCCGCCCCAGGTCCTCGTCACCCGCCACTCCAGGCCACAGCCTCGCTCCccgcccaccgcgcggggccgaccgaggtccgcccccccgccgctgccgccgccgccgccgAGGCCCTTGATGGCGAAAAAGGTTGCCCTAGGGTTCCGGTTATGCGAGGTGGTGCTGTGTCTTATTTCGTTCTCGGTTATGGCTGCGGACAAGACCCGTGGTTGGAGCGGTGACTCTTTCGATCGCTACAAGGAATACAGGTATTGTTTATCGGTGAATGTTATTGCATTCGTATACGCAGCGTTTCAATTGGGCGATTTGGGGTTTGAAATAGTGAGGAGGAGAAGCATGATGAGTCACCACCTGCGTTACCACGTTGATTTCTTCATGGATCAGGCAAGTAAAAAGGATAAAAAGGTTTAA 615 0.5008 MNTPHFEAPHSPLYDRSSPLSDAADPFHSPQNSPDNSRHIVILETSAQFAQAAPPAPDSDHQPPPLNVPPQVLVTRHSRPQPRSPPTARGRPRSAPPPLPPPPPRPLMAKKVALGFRLCEVVLCLISFSVMAADKTRGWSGDSFDRYKEYRYCLSVNVIAFVYAAFQLGDLGFEIVRRRSMMSHHLRYHVDFFMDQASKKDKKV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01850 204 MobiDBLite consensus disorder prediction 85 106 - -
Cca11g01850 204 Pfam Casparian strip membrane protein domain 110 197 IPR006702 -
Cca11g01850 204 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 109 196 - -
Cca11g01850 204 PANTHER CASP-LIKE PROTEIN 109 196 - -
Cca11g01850 204 MobiDBLite consensus disorder prediction 1 106 - -
Cca11g01850 204 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01850 Cca-Chr11 43607932 43613253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01850 - - gmx:100812568 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00478 03 7702623 7706045 Cca11g01850 11 43607932 43613253 ECH
Cca11g01850 11 43607932 43613253 Cca11g01850 11 43607932 43613253 ECH
Cca11g01850 11 43607932 43613253 Cca03g00478 03 7702623 7706045 PCT