Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00478 ATGAACAAGTCGCACTCCAAGAACTCCGAGTCCTCCACTCAGTGCGACTCGCCCGCCCACTTCCACTCCCCCATGCACTGGGACCCCACCGATCTGCCGGAGGAGTACCTCTCGCCGGAAAGCGCGCCGGAAAAACACGCCGACAACTCCTTGGCCGTCGTCACCGTCAGCAGCATGCTCAAGCACTTCAAGCCTGAGAAGCAACCGGACCACCGCAAGCCGCAGGATAACAACGCGGCATCGGCGCTCACGGTCTTCAACGCCCCCGCGACGGAGCCCCGGGAGGAGCCTCAGCGACCGGCGGTCGGCGGAGGGGAACGGAGGCCGAGGCTTTCGCCGGAGCGGCGGAAGTCGGCGGAGACAGTGAGCAAGGCTGCGCTAGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTCTCTGTTATGGCGGCGGATAAGACGCAAGGTTGGAGTGGCGATTCCTATGACCGCTACAGAGAATATAGGTATTGTTTATCTGTGAATGTCATTGGCTTTGCATACTCAGCATTACAGGCATGTGATCTGGTATATCAATTAGCCACGGAGAAACACTTAATCAATCATCACCTTCGCTACCACTTCGATTTCTTCATGGATCAGGTTGTGGCATATCTTCTGATATCGGCATCATCATCTGCAGCCACACGGGTTGATGACTGGCAATCGAATTGGGGGAAAGACGAGTTCACTGAAATGGCAACTGCTTCAATTGGAATGTCCTTCCTTGCTTTTGTTGCCTTTGCTATCAGCTCACTCATCTCTGGTTACACCCTATGCAATCGCACCTCCATCTGA 822 0.5547 MNKSHSKNSESSTQCDSPAHFHSPMHWDPTDLPEEYLSPESAPEKHADNSLAVVTVSSMLKHFKPEKQPDHRKPQDNNAASALTVFNAPATEPREEPQRPAVGGGERRPRLSPERRKSAETVSKAALGFRLSEVVVCLISFSVMAADKTQGWSGDSYDRYREYRYCLSVNVIGFAYSALQACDLVYQLATEKHLINHHLRYHFDFFMDQVVAYLLISASSSAATRVDDWQSNWGKDEFTEMATASIGMSFLAFVAFAISSLISGYTLCNRTSI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00478 273 MobiDBLite consensus disorder prediction 1 19 - -
Cca03g00478 273 PANTHER CASP-LIKE PROTEIN 59 272 - -
Cca03g00478 273 MobiDBLite consensus disorder prediction 86 117 - -
Cca03g00478 273 MobiDBLite consensus disorder prediction 99 117 - -
Cca03g00478 273 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 59 272 - -
Cca03g00478 273 MobiDBLite consensus disorder prediction 59 78 - -
Cca03g00478 273 MobiDBLite consensus disorder prediction 1 53 - -
Cca03g00478 273 Pfam Casparian strip membrane protein domain 121 255 IPR006702 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00478 Cca-Chr3 7702623 7706045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00478 - - gmx:100789870 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00478 03 7702623 7706045 Cca11g01850 11 43607932 43613253 ECH
Cca03g00478 03 7702623 7706045 Cca03g00478 03 7702623 7706045 ECH
Cca11g01850 11 43607932 43613253 Cca03g00478 03 7702623 7706045 PCT