Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01847 ATGCCAGGGATTGTTACAAATGGAGTTATTAATGATCAAAAGGATGTAAATGAAATTAATGGGATTGGGAACACTTCACCCTTGAAGGAAACCTCAACACCAATCAAATGCCAAAGGAGTTCCTTGAGTCCACAAAGACACCAAAGTGTTGATCCAAATTTACCTGCTGATAGGGTGGTTGACACTTGCTTAATTGATCGGCTTGATGAAAATGTAAGTGACATGCAAAATTCTCCTCAATCATCCTCAAGACAAAGTTTTGGATCCGATGGTAATGAGTTTAGAACTGATTCGGACTTGCACCATGTAGTTGGAGGACATATGAGAGAGGTTGAGATAGTGAAAGAGGGGGCGAAGGAAAAGGCACAAAGGGATTCTAGTGGTGAAACATCTTCCACAATGGGTAGTTCACCCAATGATAAGAAGTTGAATAAGGTGAATGAGATTCGGTCACCAACTGCAAGTAGTTTCGTTTCAAAAATACCAAAGTTAGCCCCTGAAACACCACCAAAATCAAGAACAAAGGGAAAAGCCACTCCTGTAAAACCTCCTATTGATAGGAAGAATGACAATATTTTGAGAAAACAAAATACAGGAATTGCCCGCGTGAAAAAAACTGATGGTAGAAGATCACTGTCGCAAGGTAATATTGAGTTTTCCAGTGAATCAGCATTGAATAATCCTGAGCTGGGACAAGCCTTACTAAACCAAGCAAGGAACATGATTTCATCAGGAGATAATTCACAGAAAGCCCTTGAGTTAGCTCTTCAGGCAAAGAAATTGTTTGAGAGGGCAGCTTATGGGAAGAAACCAAGTTTGGAGTTGGTCATGTGTTTGCATGTTACTGCAACAATATATTGCACTTTGGGCCATTTCAATGAAGCAATTCCAATTATAGAGCGCTCAATTGAGATTCCTGTTATCGAGGAAGGCCAACAACATGCCATTGCTAAATTTGCCGGACACATGCAACTAGGAGACATCTATGCTATGCTAGGCCAGCTTGAGAAGTCAATCAAGTGCTACACTGCAGGGTTGGAAGTACAAAAACAAGTTTTGGGAGATACAGACCCAAGAGTTGGTGAAATTTGTAGGTATGTGGCTGAAGCTAACTTTCAAGCATTGCAATTTGATGAGGCAGAGAGGTTGTGCCAAATTGCCCTTGACATTCATAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCTGACAGGAGGCTAATGGGCCTCATATGTGAAGCAAATGGAAACTATGAAGCAGCTTTGGAGCATTTTGTTTTGGCCAGCATGGCAATGGTAGCAAATGGCCAAGATGTGGAAGTGGCATCAGTTGACTGCAACATTGGAGACACATACTCATCCTTGGCTAGATATGATGATGCCATCTTTGCATATCAAAAAGCATTGAAAGTTTTCAAGACCAACAAAGGTGAGAACCATCCTGCTGTGGGACTAGTCTTTGTACGTTTGGCTGACTTGCATTCTAGAACATGGAAGATAAAGGAATCAAAATTATATTGTGAGAATGCACTTAAAATCTATGAGAATCCCATGCCTGGGGTCCCTACAGAGGAGATTGCTAGTGGTTTTATGAATATCTCAGCAATCTATGAGTCTATGAATGATCTAGAACAGGCAATTAAGTTACTACACAAGGCACTTGAGATACATGATGATGCACCTGGTCAGCAAAACACAATAGCAGGAATTGAAGCCCAGATGGGGGTCATGTACTACATGTTGGAGAAGTATAGTGAATCTTACTATGCTTTCAAGAACGCTGTGTCAAAGATTCGTGCTACTGGAGAGAAGAAAACAGCTTTCTTTGGTAATGTTCTTAATCAAATGGGACTTGCTTGTGTGCAGCTTCATGCCTTAAGTGAGGCTGCAGAATTATTTGAAGAAGCCAGGGTCGTTTTGGAACAAGAGAATGGACCCTATCATCCTGAAACACTCGGAGTATATGGCAATCTTGCTGGCACGTATGATGCAATTGGAAGGGTGGATGAGGCAATTGACATTCTGGAAAACATTATTGAAATAAGGGAGGAAAAGCTTGGGACAGCAAATCCTGATGTTGCTGATGAGAAGAGAAGGTTGGACATGTTGTTGAAGGAAACAGGAAGAGTTCGGAGGAACAGAAAAACCAAGTCACTTGAGATCCTTTTTGATGATATATAA 2184 0.4125 MPGIVTNGVINDQKDVNEINGIGNTSPLKETSTPIKCQRSSLSPQRHQSVDPNLPADRVVDTCLIDRLDENVSDMQNSPQSSSRQSFGSDGNEFRTDSDLHHVVGGHMREVEIVKEGAKEKAQRDSSGETSSTMGSSPNDKKLNKVNEIRSPTASSFVSKIPKLAPETPPKSRTKGKATPVKPPIDRKNDNILRKQNTGIARVKKTDGRRSLSQGNIEFSSESALNNPELGQALLNQARNMISSGDNSQKALELALQAKKLFERAAYGKKPSLELVMCLHVTATIYCTLGHFNEAIPIIERSIEIPVIEEGQQHAIAKFAGHMQLGDIYAMLGQLEKSIKCYTAGLEVQKQVLGDTDPRVGEICRYVAEANFQALQFDEAERLCQIALDIHRANGSPSSLEEAADRRLMGLICEANGNYEAALEHFVLASMAMVANGQDVEVASVDCNIGDTYSSLARYDDAIFAYQKALKVFKTNKGENHPAVGLVFVRLADLHSRTWKIKESKLYCENALKIYENPMPGVPTEEIASGFMNISAIYESMNDLEQAIKLLHKALEIHDDAPGQQNTIAGIEAQMGVMYYMLEKYSESYYAFKNAVSKIRATGEKKTAFFGNVLNQMGLACVQLHALSEAAELFEEARVVLEQENGPYHPETLGVYGNLAGTYDAIGRVDEAIDILENIIEIREEKLGTANPDVADEKRRLDMLLKETGRVRRNRKTKSLEILFDDI 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01847 727 Coils Coil 624 644 - -
Cca11g01847 727 Gene3D Tetratricopeptide repeat domain 208 429 IPR011990 GO:0005515
Cca11g01847 727 SUPERFAMILY TPR-like 447 682 IPR011990 GO:0005515
Cca11g01847 727 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 142 725 - -
Cca11g01847 727 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 142 - -
Cca11g01847 727 SMART tpr_5 569 602 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 403 436 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 611 644 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 528 561 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 443 476 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 485 518 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 319 352 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 653 686 IPR019734 GO:0005515
Cca11g01847 727 SMART tpr_5 361 394 IPR019734 GO:0005515
Cca11g01847 727 Gene3D Tetratricopeptide repeat domain 430 609 IPR011990 GO:0005515
Cca11g01847 727 Pfam Tetratricopeptide repeat 612 685 - -
Cca11g01847 727 SUPERFAMILY TPR-like 237 347 IPR011990 GO:0005515
Cca11g01847 727 MobiDBLite consensus disorder prediction 127 158 - -
Cca11g01847 727 PANTHER KINESIN LIGHT CHAIN 1 142 - -
Cca11g01847 727 PANTHER KINESIN LIGHT CHAIN 142 725 - -
Cca11g01847 727 SUPERFAMILY TPR-like 324 517 IPR011990 GO:0005515
Cca11g01847 727 Pfam Tetratricopeptide repeat 533 561 IPR019734 GO:0005515
Cca11g01847 727 ProSiteProfiles TPR repeat profile. 443 476 IPR019734 GO:0005515
Cca11g01847 727 MobiDBLite consensus disorder prediction 17 57 - -
Cca11g01847 727 MobiDBLite consensus disorder prediction 70 98 - -
Cca11g01847 727 Gene3D Tetratricopeptide repeat domain 610 722 IPR011990 GO:0005515
Cca11g01847 727 ProSiteProfiles TPR repeat profile. 528 561 IPR019734 GO:0005515
Cca11g01847 727 MobiDBLite consensus disorder prediction 114 212 - -
Cca11g01847 727 Pfam Tetratricopeptide repeat 323 350 IPR019734 GO:0005515
Cca11g01847 727 Pfam Tetratricopeptide repeat 447 472 IPR019734 GO:0005515
Cca11g01847 727 MobiDBLite consensus disorder prediction 71 93 - -
Cca11g01847 727 MobiDBLite consensus disorder prediction 17 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01847 Cca-Chr11 43562700 43566480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01847 - - gmx:100813461 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00476 03 7652091 7656511 Cca11g01847 11 43562700 43566480 ECH
Cca11g01847 11 43562700 43566480 Cca11g01847 11 43562700 43566480 ECH
Cca11g01847 11 43562700 43566480 Cca03g00476 03 7652091 7656511 PCT