Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00476 ATGAAGGAATTGAAGATGCCGGGAATTGCGACGAACGGGGTTCATGATGAAGGGGGAGGTGATGAGACGAATGAGAACCCTGATTCCTCCTCTAAGGAGGCCTTGAATCCGGTTGGGTCGCCGAGGGGTTCTTCGAGTCCGCAAAGAGGCCAAGGTGGTGGTGCTGATCATGGGGGTGATCGGGTGGCTGAGCCCTCCATTGAACAGCTTTATGAGAATGTGTGTGACATGCAGAGTTCTGATCGGTCGCCGTCGAGGCAAAGCTTTGGATCCGATGGTGATGAGTCTAGAATTGATTCGGAGTTGAGGCATCTAGTTggaggaaggatgagggaggtggagataatggaagaggaagtgggggaggggaAAGGGCCAGAAGGGAGTTCAAGTAGTGAAATATCTTCTGGATTGGGTGGTTTATCCAATGATAAGAAGTTGGATAAGGTGGATGAGATTAAGGAGATTCAGCCTGCAGCTACTAGTTCTGGTTCTGGTTTTGATTCCTCAGAAAAATCTGCCAAAGCAGCAGCATCGAATTCTCAGGTGGAACCTGATGCTTCTTCGCCCAAATCGACAACCAAGGGAAAAAGTCCTCTTCCGAAAGCTCCTATTCAGAGAAAGAATGGTAGTAAGCCTTTGAGGAAACAGATTAGTGGAGTTAGTAGAGTGAAGAATACGAAGAATTCTCCTGTGGGTAAGTCAGTGCCGCGAAACCGAGTTGAGAGTACGGCTCAGTCAGCATTAGAGAGACCTGAACGGGCACCGTTTTTACTAAAGCAAGCCAGAGATCTGATCTCATCAGGAGATAATCCGCAGAAGGCTCTTGAGTTAGGTCTTCAGGCAATGAAACTGTTTGAGAAGCTTGGTAATGGGAAACCAAGTTTGGAGCTGGTGATGTGTTTACATGTTATAGCAGCAATATATTGCAGCCTGGGTCAATATGGTGATGCAATTCCGATTCTTGAGCGATCAATTGAGATTCCTGTTATTGAGGAAAGTCAACAGCACGCCCTTGCTAAATTTGCCGGTCACATGCAACTGGGAGATACCTATGCCATGCTGGGACAGCTTGAGAATTCAATTTCATGCTACACCACTGGGTTAGAAGTCCAAAGGCAGGTTTTGGGAGAGACAGACCCAAGAGTTGGTGAAACTTGTCGGTATGTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTGATGAAGCAGAGAGGCTATGTCAAATGGCTCTTGACATTCATAAAGAAAATAATTCAGCTCCATCTCTTGAAGAGGTAGCTGATAGGAGGCTCATGGGTCTTATATGTGAGACAAAGGGAAATCACGAAGCAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCAATGGTAGCTAATGGCCAGGAAGCGGAAGTGGCGGCTGTTGACTGCAGCATTGGAGACACTTACTTATCCTTGTCTCGATATGATGAGGCTGTCTTTGCATATCAGAAAGCGCTAACCGTTTTCAAGAACAGCAAAGGAGAGAATCATCCAACAGTGGGATTAGTCTTTGTACGTTTGGCAGACTTGTATAATAGGACAGGGAAGATAAGGGAATCAAAATCGTATTGCGAGAGTGCGCTCAAAATATATGAGAATCCTATGAGTGGAGTTCCTCCAGAGGAGATTGCTAGTGGTTTTACGAGTATTTCAACTATCTATGAGTCAATGAATGAGCTTGAACAGGCACTCAAGTTACTGCAGAAGGCACTGGAGATATATAATGATGCCCCTGGTCAGCAAAGCACAATAGCTGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGTTGGGGAACTATTCCGAATCTTACAACACTTTGAAGGATGCTATTTCAAAGCTTCGTGCTATTGGAGAAAAGAAATCATCCTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGCGTTATGCCTTAAACGAGGCTACAGAATTATTTGAAGAAGCAAAGATTATTTTGGAACATGAGTATGGACCGTATCACCCAGAAACACTTGGGGTGTATAGTAATCTTGCTGGCACGTATGATGCAATTGGCAGGTTGGATGATGCAATTCAACTTCTGGAGTACGTCGTTAGCATGAGGGAGGAGAAGCTTGGGACAGCAAACCCTGACGTGGATGATGAGAAGAGAAGGTTGGGTGAGTTGTTGAAGGAGGCAGGTAGAGTTCGGAGCAGAAAAGCCAGGTCACTTGAAAACCTTCTTGATGGCAATGCTCACACTGTAAACAACGTTGTCATCAGTGCCTGA 2283 0.4428 MKELKMPGIATNGVHDEGGGDETNENPDSSSKEALNPVGSPRGSSSPQRGQGGGADHGGDRVAEPSIEQLYENVCDMQSSDRSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEGKGPEGSSSSEISSGLGGLSNDKKLDKVDEIKEIQPAATSSGSGFDSSEKSAKAAASNSQVEPDASSPKSTTKGKSPLPKAPIQRKNGSKPLRKQISGVSRVKNTKNSPVGKSVPRNRVESTAQSALERPERAPFLLKQARDLISSGDNPQKALELGLQAMKLFEKLGNGKPSLELVMCLHVIAAIYCSLGQYGDAIPILERSIEIPVIEESQQHALAKFAGHMQLGDTYAMLGQLENSISCYTTGLEVQRQVLGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKENNSAPSLEEVADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVAAVDCSIGDTYLSLSRYDEAVFAYQKALTVFKNSKGENHPTVGLVFVRLADLYNRTGKIRESKSYCESALKIYENPMSGVPPEEIASGFTSISTIYESMNELEQALKLLQKALEIYNDAPGQQSTIAGIEAQMGVMYYMLGNYSESYNTLKDAISKLRAIGEKKSSFFGIALNQMGLACVQRYALNEATELFEEAKIILEHEYGPYHPETLGVYSNLAGTYDAIGRLDDAIQLLEYVVSMREEKLGTANPDVDDEKRRLGELLKEAGRVRSRKARSLENLLDGNAHTVNNVVISA 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00476 760 MobiDBLite consensus disorder prediction 1 254 - -
Cca03g00476 760 Pfam MalT-like TPR region 395 595 IPR041617 -
Cca03g00476 760 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 749 - -
Cca03g00476 760 Pfam Tetratricopeptide repeat 299 328 - -
Cca03g00476 760 Gene3D Tetratricopeptide repeat domain 631 745 IPR011990 GO:0005515
Cca03g00476 760 Gene3D Tetratricopeptide repeat domain 238 452 IPR011990 GO:0005515
Cca03g00476 760 SUPERFAMILY TPR-like 469 705 IPR011990 GO:0005515
Cca03g00476 760 MobiDBLite consensus disorder prediction 29 51 - -
Cca03g00476 760 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 749 - -
Cca03g00476 760 MobiDBLite consensus disorder prediction 72 91 - -
Cca03g00476 760 MobiDBLite consensus disorder prediction 212 246 - -
Cca03g00476 760 SUPERFAMILY TPR-like 284 588 IPR011990 GO:0005515
Cca03g00476 760 MobiDBLite consensus disorder prediction 158 196 - -
Cca03g00476 760 Gene3D Tetratricopeptide repeat domain 453 630 IPR011990 GO:0005515
Cca03g00476 760 SMART tpr_5 299 332 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 634 667 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 508 541 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 676 709 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 342 375 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 551 584 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 466 499 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 592 625 IPR019734 GO:0005515
Cca03g00476 760 SMART tpr_5 384 417 IPR019734 GO:0005515
Cca03g00476 760 Pfam Tetratricopeptide repeat 635 707 - -
Cca03g00476 760 Coils Coil 557 584 - -
Cca03g00476 760 MobiDBLite consensus disorder prediction 92 124 - -
Cca03g00476 760 Pfam Tetratricopeptide repeat 346 373 IPR019734 GO:0005515
Cca03g00476 760 ProSiteProfiles TPR repeat profile. 551 584 IPR019734 GO:0005515
Cca03g00476 760 ProSiteProfiles TPR repeat profile. 466 499 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00476 Cca-Chr3 7652091 7656511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00476 - - gmx:100791625 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00476 03 7652091 7656511 Cca11g01847 11 43562700 43566480 ECH
Cca03g00476 03 7652091 7656511 Cca03g00476 03 7652091 7656511 ECH
Cca11g01847 11 43562700 43566480 Cca03g00476 03 7652091 7656511 PCT