Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01845 ATGGCCtcccaatcgcagtcgcagcctcagcctcagcctcCTCCCACTCCCACCGCCACTACCAATCAAGGTTCTGAAGTTGTGCAACCAACAAATGTGGATCAGAAAAATGCTAGAGAAGAGCCTGCTAAACAGAGTTCAATTACATCAGTTTTTGTGAACTCACAACCGTTGCGGGAAGAACAAGTTCAGAATGCTGTGAAATTTCTATCGCACCCAAAAGTTAGAGGTTCACCTGTCATCTATAGGCGATCATTTTTAGAGAGGAAGGGCCTTACAAAGGAGGAGATTGATGAAGCCTTTCGGCTTGTTCCAGATTCAGCTCCAACTGTGCAGACATCTGGTGTAAATCAAGATGAGCAAATGAAATCATCATCAAACATTCAGCAACAGTCCCAACAACAAACATTGCAGCCAAGTCTTCCTGCTTCTACTGGTGTTAATACTTCATCAGGAACCTTATCACGCTCCAGATTTCACTGGTCCCATGCCCTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAATTCTATTCTCCCTCGGTTAAAATCTTGGGTACGCAAGGTTGTCTTAGACAATGATGATGAACAATTAAAGAAAAATGACAACAAACCAACAGTGATGGAAGAAGCTGCACAAGCTGCAAAATCAGCTGCAGCTGCAGCTGCTGATGTGGCAAAAGCAAGCCAAGAAATACTGGCTTCAAAAGGGGAAGGGGGGAGGAGATACTTCACGGAAGTTGTGGGCCTTTTAGATAAGCAAGTACAAGAAATGAAGTTAATGACAAATGCCATAAGAAGATTGGAAGTCTTATTTTCTGAATTATTGCCTATAATTAGAATATCATGTGCAGTGAGATCTTCATCCCCACCTGTATCTGTTGAACCATCAAGTGGTCTTCATCCAAAGTCATATATGGAGATAATGGCCATGGTCCAAAGAGGAGAGAAGCCTTCCAATAATAGACCATGGGAGGTTGGTCAGGTGCAAAGCACGTCTACCCAGATCCTTCAATCTCAAGTAAATGGTGAAGACTTGAATACCAAGGCCCAGGGTATCCCTCAATTAAACGGTGATGACCCATTGCCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGATAATGAAAATGAATATAATGGAGTACCTTATGCTGCTTCATCCAGTCAGCAGCCAGTGCAACAGCCAGTTCAACGCACATGGGTTCCTCCTCAACCGCCCCCCATAGTTATGGCGGAGGCTGCAGAAGCAATCAGACGCCCAAAGCCAGCAGTTCAAAAGGAACAGATGTCAGATAATCAGGCAGCAGTTTTAACTCAGTTTCCAGCTCTGGTGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATAAAGAATGCTGCGAAGCAAATCTATTACAAACTAATGGCAACGCGAAGGATAAATCCGAAGTTGATCAAACTAGCAGTGAAAATTGTCTTCAGCTAAGGAACAAATGA 1512 0.4213 MASQSQSQPQPQPPPTPTATTNQGSEVVQPTNVDQKNAREEPAKQSSITSVFVNSQPLREEQVQNAVKFLSHPKVRGSPVIYRRSFLERKGLTKEEIDEAFRLVPDSAPTVQTSGVNQDEQMKSSSNIQQQSQQQTLQPSLPASTGVNTSSGTLSRSRFHWSHALIAVGLLAASGAGTAIIIKNSILPRLKSWVRKVVLDNDDEQLKKNDNKPTVMEEAAQAAKSAAAAAADVAKASQEILASKGEGGRRYFTEVVGLLDKQVQEMKLMTNAIRRLEVLFSELLPIIRISCAVRSSSPPVSVEPSSGLHPKSYMEIMAMVQRGEKPSNNRPWEVGQVQSTSTQILQSQVNGEDLNTKAQGIPQLNGDDPLPWWQRKNVRIREIDNENEYNGVPYAASSSQQPVQQPVQRTWVPPQPPPIVMAEAAEAIRRPKPAVQKEQMSDNQAAVLTQFPALVRYKRSMKSNMMRNKECCEANLLQTNGNAKDKSEVDQTSSENCLQLRNK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01845 503 MobiDBLite consensus disorder prediction 107 153 - -
Cca11g01845 503 Gene3D - 51 113 IPR036388 -
Cca11g01845 503 MobiDBLite consensus disorder prediction 106 153 - -
Cca11g01845 503 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 330 444 IPR025655 GO:0005515|GO:0005778|GO:0016560
Cca11g01845 503 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 17 329 IPR025655 GO:0005515|GO:0005778|GO:0016560
Cca11g01845 503 MobiDBLite consensus disorder prediction 19 49 - -
Cca11g01845 503 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 330 444 - -
Cca11g01845 503 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 17 329 - -
Cca11g01845 503 MobiDBLite consensus disorder prediction 1 49 - -
Cca11g01845 503 MobiDBLite consensus disorder prediction 480 503 - -
Cca11g01845 503 Pfam Pex14 N-terminal domain 59 102 IPR006785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01845 Cca-Chr11 43518456 43526913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01845 K13343 - gmx:100786361 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01845 11 43518456 43526913 Cca03g00474 03 7605139 7610215 PCT