Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00474 ATGCGCGAGGAGCAAATCCAGAATGCTGTGAAATTTCTATCGCATCCCAAAGTTAGAGGTTCTCCTGTCATCCACAGGCGTTCGTTTCTGGAGAAGAAGGGGCTTACCAAGGAGGAGATAGATGAAGCATTTCATCGCGTGCCTGATGAACCTCCAAGTGTGCAAACAGCTGGTGTAAATCAAGATGGACAATTGAAGCCATCATCAAACATTCAGCAGCAAGGCCAATCACAGGCTTTGCAGCCGACTGTACCTGCTTCTACAGGTGTGACTACTTCGTTGGGAACCTTATCACGCCGCAGTTTTCGTTGGACTCATGCGCTTTTTGCAGTTGGAATTGTAGTTGCTTCAGGTGCTGGAACATTTATTCTAATAAAGAAATCTGTTCTCCCTTGGTTAAAATCGTGGATACGCAATGTTGCCCTAGAAGAGGAAAATGACCAATTAAAGAGAATATGCTCAAAACCATCGTTGGCAGAAGAAACTGCACAGgctgcaaaagtagctgcagttgcagctgcagATATTGCAAAAGCAAGCCAAGAACTACTGACTTCAAAAAATGAAGAGAAGAGATATTTCGTTGAAGTTTTGAGCCTTTTGGATAAGCAAGTGCAGGAAATGAAGTTGATGACTAATGCAATAAGAAGATTGGAAGCTTCTGGTGGATTCTCTGTCTCAAAGCAAGAAGATCGCCTAGCCACTCAAACAAGTTCAAAGATACAACAACTTATCATGAATGGGAAGTCAGACTATGAGTCCCGAACAGTGAGATCTTCATCCCCTCCTGTATCTGCTGAACCATCTAGTGCTCCCCATCCAAAATCATATATGGAGATAATGGCCATGATCCAAAGAGGGGAGAAGCCTTCTAACATTAGAGAAATTGATGATTCACCCCCAAACCCTTACCAGCAACCATCAAATCCTCGCTTAGCACCTAGAGCCAAGCCTTGGGAGGTTAGTCAGGCTCAAAACACCTCAACCCAAGTCCTTCAGTATCAAGTAAATGGAAAGCTTCAAGATGGTGGTGACAATCAAGTACCCTGGTGGCAAATAAAAAACGCCAGAATCAAAGAGATTGATAACGAAACCGAGTATAGTGGAGCACCTGCTGCATCCAGTCAACCACCAGTCCAACGAGCGTGGGTTCCCCCTCAACCTCCTCCCATAGCAATGCCAGAAGCAGCAGAAGCGATCAGACGCCCAAAGACGGTAGTCCAAAAGGAAGTGACGTCGGCTGATCAGTCGGAAGCTCATCCTTCAGACATCAATGATGGACCCAAATCTGAAGATTCAATAGCCTTCAGCAACGACAACTCACTTGTCAGCTCTGGTGAGATCCAAAATCATGAAGTCAGTTACGAAGAGAAATGA 1377 0.4379 MREEQIQNAVKFLSHPKVRGSPVIHRRSFLEKKGLTKEEIDEAFHRVPDEPPSVQTAGVNQDGQLKPSSNIQQQGQSQALQPTVPASTGVTTSLGTLSRRSFRWTHALFAVGIVVASGAGTFILIKKSVLPWLKSWIRNVALEEENDQLKRICSKPSLAEETAQAAKVAAVAAADIAKASQELLTSKNEEKRYFVEVLSLLDKQVQEMKLMTNAIRRLEASGGFSVSKQEDRLATQTSSKIQQLIMNGKSDYESRTVRSSSPPVSAEPSSAPHPKSYMEIMAMIQRGEKPSNIREIDDSPPNPYQQPSNPRLAPRAKPWEVSQAQNTSTQVLQYQVNGKLQDGGDNQVPWWQIKNARIKEIDNETEYSGAPAASSQPPVQRAWVPPQPPPIAMPEAAEAIRRPKTVVQKEVTSADQSEAHPSDINDGPKSEDSIAFSNDNSLVSSGEIQNHEVSYEEK 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00474 458 MobiDBLite consensus disorder prediction 246 275 - -
Cca03g00474 458 MobiDBLite consensus disorder prediction 54 86 - -
Cca03g00474 458 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 1 427 IPR025655 GO:0005515|GO:0005778|GO:0016560
Cca03g00474 458 Pfam Pex14 N-terminal domain 2 45 IPR006785 -
Cca03g00474 458 MobiDBLite consensus disorder prediction 431 450 - -
Cca03g00474 458 MobiDBLite consensus disorder prediction 48 86 - -
Cca03g00474 458 MobiDBLite consensus disorder prediction 292 314 - -
Cca03g00474 458 MobiDBLite consensus disorder prediction 364 458 - -
Cca03g00474 458 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 1 427 - -
Cca03g00474 458 Pfam Family of unknown function (DUF5572) 272 321 - -
Cca03g00474 458 MobiDBLite consensus disorder prediction 246 266 - -
Cca03g00474 458 Coils Coil 201 221 - -
Cca03g00474 458 Gene3D - 1 54 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00474 Cca-Chr3 7605139 7610215 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00474 K13343 - gmx:100807229 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01845 11 43518456 43526913 Cca03g00474 03 7605139 7610215 PCT