Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01843 ATGACGGAGAAGGAGGCACCATCTTCTCCAACCTTGGCCCATTATTACTCTCACTCTTCCCAGTCATTCCCTCTCATTTCCGCCAGAGATAATCCTAACCACAACCTCACTCCCCAAAACCACGACGTTGACGTAGACGACGACTTCGAATTCTCCTTCTCCACCAACCTCCCCGGCTTCTCCCCCGTCTCCGCCGAAGACATTTTCCTCAACGGCCAAATCAAACCCACCAGCCCTCTCCTCCACCAAAACGCCCTCGTCCACGCTCCCGCCGAAGCACCCAGACGCTTGCCTCTCAGGAAGCTCATGCTGGAGGAGCGACCCACCACGGTCACCGTCGTCAACGACCTCGACGGCATTGATGCCGGATCCTACTGCGTGTGGACCCCACAGCACAAGAAGAAAACCTCCGCGTCAAAGCGCTGGAAGTTTCGGAACCTTCTGCCGCGGAGTCACCGCGGGGATGGCAGGAAGTGGGGCTCCTTCGCCGACAACGGTGGCGCCGCCGCGAAGTTTGTTGGGTTTTTCAGTAACGGCAATGGACTCGGTCGGAGTAATTTGCGACCAAGGACAAAATAG 579 0.5734 MTEKEAPSSPTLAHYYSHSSQSFPLISARDNPNHNLTPQNHDVDVDDDFEFSFSTNLPGFSPVSAEDIFLNGQIKPTSPLLHQNALVHAPAEAPRRLPLRKLMLEERPTTVTVVNDLDGIDAGSYCVWTPQHKKKTSASKRWKFRNLLPRSHRGDGRKWGSFADNGGAAAKFVGFFSNGNGLGRSNLRPRTK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01843 192 PANTHER DUF1645 FAMILY PROTEIN 34 163 - -
Cca11g01843 192 Pfam Protein of unknown function (DUF1645) 65 158 IPR012442 -
Cca11g01843 192 PANTHER - 34 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01843 Cca-Chr11 43479670 43480386 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01843 - - gmx:102660523 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01843 11 43479670 43480386 Cca03g00473 03 7570217 7571572 PCT