Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01842 ATGGAGCAAACCATCAACAATTTCTTGCTCCACGACCCTTTAATTCCCTCCGACTCCGACTCCGACTCCGCTGAGGAACTGCTTTCCGACTGCGAGAGCGGCGTTTCCGGCCACGACTCTCCGTTCGGCCACGGATTCGAACCGCCCAGGGAAGAAGGGGACCACATCTGGACCAAATTCGCTCGGCCCTTGGAACAGAATGGGCTCAAGCCCGAACTGGTGGCTATTGGCAAGAACGCGGCTTCCTCTGTCACGGCCCAAGCCCGTCTCAAGTCCTTTCGGCTTTTCGAGCAAGCCACGGCCGAATCACGCCAAGGCAATGCTAACGTTAAGTTCGCTTGGTACGGTGCGTTTTGCAAGGACGAGTTAACCGACATCGTGAAGCACGGTTTCATGGCCCATGCTCCCGGTAGCGCCCTGCGCCTCTCCGCACTGGATTATCCACTCCCAAGTGTGCAGAATGCTGCTGTTGACATGGAGGGTTCGCGGCACTTGATTTTGTGTCGCGTGATAGTGGGGAAAACAGAGGTGGTGCCGCGTGGCTCCAATCAACGCTGTTGGAGTTCCGAGGAGTTTGATTCTGGGGTGGATGATCTCGCCAATCCCAAGGAATATGTGATTTGGTGGAATCGTGTCAACACTCATATTTTCCCTGAATATGTCATGAGTATCAAGCTTACTAACTTGAGAGGGTTTGGGGTACCGCGGAGACCGACTTCGCCATGGGTGCCATTCCCAGCTCTGATTGCAGTGCTTTCCAGGGTTTTGCCTCAGCATCACGTTAACGTCATTTCCAAGTTTCACAAAGGATATAGAGAAAACAAGATTTCTCGACTTGAGCTGATACAGAAAGTGAGACAAATAGCGGGCGACGAAAGGCTAACTTCTATCATCAAAGCTTTCAAAATGAAGAAAACAGCTGCATTTTGTAAGGAGTGGAAGAACAAACGAGGAGAAAGAGTTGCAACCCCACCACCGCCAGCAGAGTCATCAGAGGGAACAGAATGA 1008 0.5198 MEQTINNFLLHDPLIPSDSDSDSAEELLSDCESGVSGHDSPFGHGFEPPREEGDHIWTKFARPLEQNGLKPELVAIGKNAASSVTAQARLKSFRLFEQATAESRQGNANVKFAWYGAFCKDELTDIVKHGFMAHAPGSALRLSALDYPLPSVQNAAVDMEGSRHLILCRVIVGKTEVVPRGSNQRCWSSEEFDSGVDDLANPKEYVIWWNRVNTHIFPEYVMSIKLTNLRGFGVPRRPTSPWVPFPALIAVLSRVLPQHHVNVISKFHKGYRENKISRLELIQKVRQIAGDERLTSIIKAFKMKKTAAFCKEWKNKRGERVATPPPPAESSEGTE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01842 335 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 22 311 IPR044964 -
Cca11g01842 335 ProSiteProfiles RST domain profile. 236 307 IPR022003 -
Cca11g01842 335 MobiDBLite consensus disorder prediction 9 49 - -
Cca11g01842 335 Pfam RCD1-SRO-TAF4 (RST) plant domain 237 301 IPR022003 -
Cca11g01842 335 Gene3D - 47 225 - -
Cca11g01842 335 SUPERFAMILY ADP-ribosylation 84 225 - -
Cca11g01842 335 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4 22 311 - -
Cca11g01842 335 ProSiteProfiles PARP catalytic domain profile. 47 243 IPR012317 GO:0003950
Cca11g01842 335 MobiDBLite consensus disorder prediction 314 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01842 Cca-Chr11 43460169 43463123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01842 - - ccaj:109812237 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01842 11 43460169 43463123 Cca03g00472 03 7557579 7559924 PCT