Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00472 ATGGACGATGATTCCGTTATTTCCGATAGCCAAAGCTCCGTTTCCGTCACCGCGCAACACCATGCTCCTCTCCTTACCCTCCCACACGGTGACGCCGTCCACGACCTCATCAAGACAAGCTTCCTTCGCGGACTGGGCCCGCTCGGGCCCAAAACCCAGGTCCTTTCCGTCCAACGAAACGCATGTTCCACCGCCGTTTCGCAAGCGCGTCTCCACTCCTTTCATCTTTACGCTAAGGCGGTCGCAAAACTTCGCCACGCCAATGCCAACGTTAAGTACGCCTGGTACGCCACTCGCGGCCACACCGACGTAAACGACATCGTTTCGCACGGCTTCGCTCACGCACACGGTCCCAGACTACTTCTCTCCCCCGACGACGCTCCTCTGCAAAGTGTGAAAGAGTGTGTGGTTGGGGGAGACGGTGTGAGGCACGCGTTACTGTGCCGCGTTATTCTCGGAAGATCTGAGATTGTTGATGTTGAGGGTGACACAGAGCAATGTTGTCCTACTTGTGACGACTATGATTCTGGGGTGGATAGTTTTTCGGCTCCAACCAAGTACATCATTTGGAGTAACAACATGAACACACATGTTTTACCTGCTTATGTTGTCAGCTTCAGGCTTCCTTCCTCCCAAGGGATTGATGAGAAGAGTGAGGAAGAGCCTTTGACGCCTTCTTCGCCGTGGATGCCATTCCCGACTCTGATTTCTGTCCTTTCCAAGGTTATGGCTCCGTCTGATGTTGCCCTTATCTCCAACTTCTACAAAGATAAAAAAGAGAACAAGATTTCACGACATGAACTGATACAGAGAGTGAGACGAATAGCGGGAGACAAGTTGCTGATTGCGGTCATCAAATCTTACAGACAAAATAAAAAACCAAGCTTTCTGCAAATAAGGTCAAAGAATGGACGAATGGCTTGGCAACAAGGATAG 936 0.5085 MDDDSVISDSQSSVSVTAQHHAPLLTLPHGDAVHDLIKTSFLRGLGPLGPKTQVLSVQRNACSTAVSQARLHSFHLYAKAVAKLRHANANVKYAWYATRGHTDVNDIVSHGFAHAHGPRLLLSPDDAPLQSVKECVVGGDGVRHALLCRVILGRSEIVDVEGDTEQCCPTCDDYDSGVDSFSAPTKYIIWSNNMNTHVLPAYVVSFRLPSSQGIDEKSEEEPLTPSSPWMPFPTLISVLSKVMAPSDVALISNFYKDKKENKISRHELIQRVRRIAGDKLLIAVIKSYRQNKKPSFLQIRSKNGRMAWQQG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00472 311 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 3 298 IPR044964 -
Cca03g00472 311 Pfam RCD1-SRO-TAF4 (RST) plant domain 225 290 IPR022003 -
Cca03g00472 311 ProSiteProfiles PARP catalytic domain profile. 11 227 IPR012317 GO:0003950
Cca03g00472 311 SUPERFAMILY ADP-ribosylation 23 209 - -
Cca03g00472 311 ProSiteProfiles RST domain profile. 223 294 IPR022003 -
Cca03g00472 311 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4 3 298 - -
Cca03g00472 311 Gene3D - 23 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00472 Cca-Chr3 7557579 7559924 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00472 - - pvu:PHAVU_009G178500g 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01842 11 43460169 43463123 Cca03g00472 03 7557579 7559924 PCT