Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01839 ATGGCGCACACGGGCAACAATTCAATGCATAGGTCGAGTTCACGCCCTCAACTGGATCTCAGCAAAGCTGAAATTCAAGGAAACGTCGAAGAGAAATATCCAACTATTTTGTTACCCAATCAATCTCATGATATATCTCACCTCGCTCTTGACATTGGAGGATCTCTTATAAAGTTGATGTACTTTTCGAGACACGAAGACCAATCAACCCATGATAAAAGGATGAGAAATGTGAAGAATCGACTGGATGGTAACAGGAGAAGCTATCCCATTCTTGGTGGAAGGCTTCATTTTGTCAAGTTTGAGACTAGCAAGATTAACGAGTGCTTAGACTTCATTTATTCAAAGCAGCTTCACTGTGGTGGAGGTGAATCACGTTATTCTGATGCCACGACTGATTCCAATGCCATAATTAAGGCTACTGGTGGTGGAGCGCACAAATTTGCTGACCTTTTCAAAGAAAGACTTGGACTTAGTCTTGACAAAGAAGATGAAATGAGCTGTCTTGTCGCAGGAGCAAATTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTTACCCACATGGAGGGTCAGAAAGAGTTTGTTCAGATTGATCCTAATGACATGTTTCCTTATCTCCTAGTTAATATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGAAAATTTGAGAGGGTCAGTGGGACTAATGTTGGTGGTGGTACTTATTGGGGCCTGGGAAGGCTGTTAACAAAGTGTGAGAGCTTTGATGAGTTACTTGAGCTGAGTCAGAAAGGAGATAATAGTAACACTGATATGCTTGTTGGGGACATTTATGGTGGTATGGACTATTCTAAGATTGGCCTATCGGCTTCTACCATTGCTTCAAGTTTTGGCAAGGCTACCTCAGAAAAAAAGGAGCTTGAAGATTACAGACCTGAAGATATATCACTCTCTCTTCTGCGAATGATTTCGTACAACATTGCCCAGATATCCTACTTGAATGCTTTGCGGTTCGGGTTGAAGCGTATCTTTTTTGGAGGATTTTTTATAAGGGGTCATGCCTATACCATGGATGCTATTTCTTTTGCAATTCATTTCTGGTCTAAAGGGGATGCACAAGCAATGTTCTTGCGACATGAAGGATTTTTGGGAGCTTTAGGTGCATTTATGAGCTATGAAAAACACGGTTTAGATGACCTCATGGTGCATCAGTTAGTTGAAAGATTCCCGATGGGTGCTCCATATACAGGAGGCAAGATTCATGGCCCCCCACTTAGGGATTTGAATGAGAAGATTTCATGGATGGATAAGTTTCTGCAGAAGGGAACTGAGATCACTGCCCCTGTGCCGATGGCTCCTCCTGGAACTACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAGTACTCTGCGATCTGATGCTAGTGCTCTAAATGTTGGTGTCCTCCATCTAGTTCCCACTTTGGAGGTGTTTCCATTATTAGCTGACCTGAAAATGTATGAGCCTAATACTATTGATCTCTCAGATCACAGTGAGTTAGAGTATTGGCTAAAGATTTTGTCAGAGCACTTGCCAGATCTTGTGGACAAGGCTGTAGCAAGTGAAGGTGGGACTGATGATGCCAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACCTGGCCAGGTTAATGGAGGAGCCTGCTGCATATGGGAAGTTAGGCCTGGCCAAACTACTGGAAATGAGGGAAGAGTGCTTGAGGGAATTCCATTTTTTTGATGCATATATAAGTATAAAGCAGAGGGAAAACGAGGCATCGCTTGCTGTCTTACCTGATTTGTTGATGGAGCTTGATAGTTTGGATGAGGAGACAAGACTACTTACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGATCTCGTGCTTGTGTGGATCTCTATCATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAATAAAATGCAGAGACCTTGGCGAGTGGATGATTTTGATGCCTTTAAAGAGAGAATGCTAGGAACTGGGGACAAAAAACCACCTCCACATAGAAGAGCTTTACTTTTTGTGGACAATTCAGGTGCTGATATTGTTTTGGGGATGCTTCCCCTGGCACGAGAGCTCCTCCGACGTGGAACTGAAGTGGTCCTGGTTGCAAACTCACTTCCTGCTTTGAATGATGTGACTGCAATGGAGCTTCCAGACATTGTTGCTGAGGCTGCCAAGCACTGTGACATTCTTAGGCGAGCTGCTGAATCTGGAGGCTTGCTTGTTGATGCAATGACCAATACCTATGACAGTTCTAAAGAAAATTCATCTTCGGTTCCTTTGATGGTTGTTGAGAATGGGTGTGGTAGTCCATGTATAGACTTGAGACAGGTCAGCTCTGAGCTGGCTGCTGCTGCAAAAGATGCCGATTTGATAATTTTGGAAGGGATGGGAAGAGCTCTTCATACCAACCTAAATGCCAGGTTTCGGTGTGATGCTTTGAAGCTTGCAATGGTGAAAAACCAGAGATTGGCTGAAAAGTTGATTAAAGGAAACTTATACGACTGTATTTGCAAATACGAGCCTGCTAACTGA 2595 0.4312 MAHTGNNSMHRSSSRPQLDLSKAEIQGNVEEKYPTILLPNQSHDISHLALDIGGSLIKLMYFSRHEDQSTHDKRMRNVKNRLDGNRRSYPILGGRLHFVKFETSKINECLDFIYSKQLHCGGGESRYSDATTDSNAIIKATGGGAHKFADLFKERLGLSLDKEDEMSCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDPNDMFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCESFDELLELSQKGDNSNTDMLVGDIYGGMDYSKIGLSASTIASSFGKATSEKKELEDYRPEDISLSLLRMISYNIAQISYLNALRFGLKRIFFGGFFIRGHAYTMDAISFAIHFWSKGDAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLRDLNEKISWMDKFLQKGTEITAPVPMAPPGTTGLGGFEVPLSKGSTLRSDASALNVGVLHLVPTLEVFPLLADLKMYEPNTIDLSDHSELEYWLKILSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLAKLLEMREECLREFHFFDAYISIKQRENEASLAVLPDLLMELDSLDEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGTGDKKPPPHRRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAESGGLLVDAMTNTYDSSKENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRALHTNLNARFRCDALKLAMVKNQRLAEKLIKGNLYDCICKYEPAN 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01839 864 PIRSF PanK_long 1 864 IPR015844 GO:0004594|GO:0015937
Cca11g01839 864 Gene3D - 265 377 - -
Cca11g01839 864 Gene3D - 40 196 - -
Cca11g01839 864 SUPERFAMILY AF1104-like 479 862 IPR036075 -
Cca11g01839 864 SUPERFAMILY Actin-like ATPase domain 45 183 IPR043129 -
Cca11g01839 864 PANTHER PANTOTHENATE KINASE 2 7 786 - -
Cca11g01839 864 Pfam Damage-control phosphatase ARMT1-like domain 571 850 IPR002791 -
Cca11g01839 864 Gene3D - 501 585 IPR035073 -
Cca11g01839 864 SUPERFAMILY Actin-like ATPase domain 155 388 IPR043129 -
Cca11g01839 864 Pfam Fumble 47 386 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cca11g01839 864 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 665 862 - -
Cca11g01839 864 TIGRFAM panK_eukar: pantothenate kinase 47 387 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cca11g01839 864 PANTHER PANTOTHENATE KINASE 7 786 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01839 Cca-Chr11 43409070 43421735 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01839 K24265 K09680 gmx:100783082 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00467 03 7367520 7383996 Cca11g01839 11 43409070 43421735 ECH
Cca11g01839 11 43409070 43421735 Cca11g01839 11 43409070 43421735 ECH
Cca11g01839 11 43409070 43421735 Cca03g00467 03 7367520 7383996 PCT