Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00467 ATGGCTGGCTCTTTGGAAAAGGAACAACAAGTTGTTGGAATTATCGAAGGGGAGAAATTGGAGAGTGGTGAAGGGGACAGAGACATGGCTCCTGCGGCAGGCAATTCCATTCACAGGTCGGGTTCAAGGCCTCAGCTTGATGTGAGCAAGGCTGAGATTCAAGGGAATGTGGAGGAGAAGTATCCCACCATCTTGTTGCCTAATCAGTCTGATGATTTGTCTCACCTGGCTCTTGACATTGGAGGATCTCTGATAAAGTTGGTGTACTTTTCAAGACATGAAAACCAATCAGCCGATGATAAAAGAAAGAAAAGTGTGAAGGAGCGACTAGGGATTTCTAATGGTAACAGGAGAAGCTTCCCTATTCTTGGTGGAAGGCTTCACTTTGTGAAGTTTGAAACGAGAAAGATTAATGAGTGCTTGGATTTCATTCATTCAAAGCAGCTTCACTGTGGTGGGTTGGAGTCACGTTACCCTGATGTGTCTGACCAGAATGGAATAATTAAGGCTACTGGAGGTGGAGCATACAAGTATGCTGACCTTTTCAAAGAAAGACTTGGGGTTAGTCTTGACAAAGAAGATGAAATGGATTGTCTTGTGGCAGGAGCCAATTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTTACACATATGGAGGGTCAGAAAGAGTTTGTTCAAATTGACCCCAATGATTTATTCCCTTATCTTCTGGTTAATATTGGATCCGGTGTTAGTATGATCAAGGTTGATGGCGATGGAAAATTTGAGAGGATTAGTGGGACAAATGTTGGTGGCGGTACTTATTGGGGCTTGGGAAGACTCTTAACAAAGTGCAAAAGTTTTGATGAGTTGCTTGAGCTGAGTCAGAAAGGAGATAATAGAACTATGGACATGCTAGTTGGGGACATTTACGGGGGTTTGGACTATTCTAAGATTGGCCTATCAGCTTCCACTATTGCATCTAGTTTTGGCAAAACAATATCAGAAAAAAAGGAGCTTGAGGACTACAGACCTGAAGATATATCACTCTCTCTTCTACGGATGATTTCTTACAATATTGGGCAGATAGCATACTTGAATGCATTACGGTTTCGGTTGAAGCGGATATTTTTTGGAGGATTTTTTATACGGGGTCACGCTTATACCATGGACACTATTTCTTTTGCCGTACATTTCTGGTCGAAGGGGGAAGCACAAGCAATGTTCTTGCGACATGAAGGATTTCTAGGAGCTTTAGGAGCATTTATGAGCTATGAGAAGCATGGTTTAGATGACCTCATGGTGCATCAGTTAGTTGAAAGGTTTCCAATGGGTGCTCCATATACAGGAGGCAAGATTCATGGCCCACCACTTGGAGATTTGAATGAGAAGATTTCTTGGATGGAGAAGTTTTTGCAGAAGGGAACAGAGATTACTGCACCTGTGCCAACAACTCCGCTTGCGGGAACTACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCTAAAGGAAATACACTGCGATCTGATGCAAGTGCTCTAAATGTTGGTGTTCTCCATCTAGTACCAACACTGGAGGTGTTTCCATTATTAGCAGACCCAAAATTGTATGATCCCAATACGATTGATCTCTCAGATCACAGTGAATTAGAATATTGGTTCACTATTTTATCGGAGCACTTACCAGATCTTGTGGACAAGGCCGTAGCAAGTGAAGGTGGAACTGATGACGCCATAAGAAGGGGTGCTGCTTTTGCTCGTGCATTTTCAGCGCACTTGGCAAGGTTGAGGGAGGAGCCTGCTGCATACGGGAAGTTAGGCCTTGCCAATCTCTTGGAAATGAGGGAAGAGTGCTTGAGGGAATTCCAGTTTGTTGATGCCTATAGAAGTATTAAGCAGAGGGAAAATGAGGCATCGCTTGCTGTTTTACCTGACTTGCTGGTGGAACTTGATAGTATGGATGAGGAAACAAGGCTGCTTACTCTAATTGAAGGTGTTCTTGCAGCAAACATTTTTGACTGGGGTTCTCGTGCATGTGTGGATCTTTATCATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAATAAAATGCAGAGACCTTGGCGGGTGGATGATTTTGATGTCTTTAAAGGGAGAATGTTAGGGACCAGGGACAAGAAAATGCCCCGTCATAAGAGGGCTTTACTTTTTGTAGATAACTCAGGTGCTGACATTGTTCTAGGGATGCTTCCACTGGCAAGGGAGCTCCTCCGCCGAGGAACTGAAGTAGTTCTGGTTGCAAACTCACTTCCTGCTTTAAATGATGTGACTGCAATGGAGCTTCCTGATATTGTAGCTGAGGCTGCCAAGGTTTGGGTGATTTTGTTTTGTGAAGCACTAATACTATAA 2370 0.4325 MAGSLEKEQQVVGIIEGEKLESGEGDRDMAPAAGNSIHRSGSRPQLDVSKAEIQGNVEEKYPTILLPNQSDDLSHLALDIGGSLIKLVYFSRHENQSADDKRKKSVKERLGISNGNRRSFPILGGRLHFVKFETRKINECLDFIHSKQLHCGGLESRYPDVSDQNGIIKATGGGAYKYADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDPNDLFPYLLVNIGSGVSMIKVDGDGKFERISGTNVGGGTYWGLGRLLTKCKSFDELLELSQKGDNRTMDMLVGDIYGGLDYSKIGLSASTIASSFGKTISEKKELEDYRPEDISLSLLRMISYNIGQIAYLNALRFRLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKISWMEKFLQKGTEITAPVPTTPLAGTTGLGGFEVPLSKGNTLRSDASALNVGVLHLVPTLEVFPLLADPKLYDPNTIDLSDHSELEYWFTILSEHLPDLVDKAVASEGGTDDAIRRGAAFARAFSAHLARLREEPAAYGKLGLANLLEMREECLREFQFVDAYRSIKQRENEASLAVLPDLLVELDSMDEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDVFKGRMLGTRDKKMPRHKRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKVWVILFCEALIL 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00467 789 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 697 783 - -
Cca03g00467 789 PANTHER PANTOTHENATE KINASE 2 21 782 - -
Cca03g00467 789 MobiDBLite consensus disorder prediction 1 47 - -
Cca03g00467 789 PANTHER PANTOTHENATE KINASE 21 782 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cca03g00467 789 Pfam Damage-control phosphatase ARMT1-like domain 603 774 IPR002791 -
Cca03g00467 789 Gene3D - 532 617 IPR035073 -
Cca03g00467 789 SUPERFAMILY AF1104-like 511 777 IPR036075 -
Cca03g00467 789 SUPERFAMILY Actin-like ATPase domain 185 418 IPR043129 -
Cca03g00467 789 Pfam Fumble 75 416 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cca03g00467 789 Gene3D - 67 226 - -
Cca03g00467 789 Gene3D - 295 407 - -
Cca03g00467 789 SUPERFAMILY Actin-like ATPase domain 74 213 IPR043129 -
Cca03g00467 789 TIGRFAM panK_eukar: pantothenate kinase 75 417 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00467 Cca-Chr3 7367520 7383996 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00467 K24265 - gmx:100781580 1403.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00467 03 7367520 7383996 Cca11g01839 11 43409070 43421735 ECH
Cca03g00467 03 7367520 7383996 Cca03g00467 03 7367520 7383996 ECH
Cca11g01839 11 43409070 43421735 Cca03g00467 03 7367520 7383996 PCT