Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01836 ATGCTGAGAGTGGGAGCAAAGAGGGTTTTGGAAACGACGTCGTTGGGAGTTAGGGTTCCGGCGAGGTTGTACCACGAGAGGGTTGTGGATCACTACAACAATCCCCGAAACGTTGGGTCGTTCGACAAGAACGACCCTAGCGTGGGGACGGGTCTGGTGGGGGCGCCGGCGTGCGGCGATGTCATGAAGCTCCAGATTAAGGTCGACGAAGAGACCGGAAAAATCGTCGATGCACGCTTCAAGACTTTCGGGTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGCTACCGAGTGGGTGAAGGGAAAGCAAATGGAGGAAGTTCTGTCTATAAAAAATACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCATGCTTGCTGAAGATGCCATTAAAGCTGCCGTTAAAGACTATGAAGCTAAGCGTGCCAAGGCAACTGCTGGTGGCGAGAAACTTGCCACTGCATGA 483 0.5259 MLRVGAKRVLETTSLGVRVPARLYHERVVDHYNNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDEETGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKATAGGEKLATA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01836 160 CDD IscU_like 23 139 IPR002871 GO:0005506|GO:0016226|GO:0051536
Cca11g01836 160 Gene3D - 23 158 - -
Cca11g01836 160 TIGRFAM iscU: FeS cluster assembly scaffold IscU 24 147 IPR011339 GO:0005506|GO:0016226|GO:0051536
Cca11g01836 160 Pfam NifU-like N terminal domain 24 149 IPR002871 GO:0005506|GO:0016226|GO:0051536
Cca11g01836 160 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 16 157 IPR002871 GO:0005506|GO:0016226|GO:0051536
Cca11g01836 160 SUPERFAMILY SufE/NifU 23 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01836 Cca-Chr11 43392337 43394352 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01836 K22068 - gmx:100526856 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01836 11 43392337 43394352 Cca03g00466 03 7343413 7344290 PCT